Hb_126669_010

Information

Type transcription factor
Description TF Family: bHLH
Location Contig126669: 6575-7987
Sequence    

Annotation

kegg
ID rcu:RCOM_1313580
description DNA binding protein, putative (EC:1.3.1.74)
nr
ID AEG74014.1
description lMYC4 [Hevea brasiliensis]
swissprot
ID O23090
description Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1
trembl
ID I3NR02
description LMYC4 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0032440
description transcription factor myc2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08062: 7821-8284
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126669_010 0.0 transcription factor TF Family: bHLH lMYC4 [Hevea brasiliensis]
2 Hb_000928_230 0.0806025563 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000523_020 0.0806148426 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
4 Hb_000270_400 0.10158476 - - lipase, putative [Ricinus communis]
5 Hb_002627_060 0.1016617273 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
6 Hb_000172_610 0.1078091949 - - hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]
7 Hb_000376_150 0.1398914938 - - O-acyltransferase WSD1 [Gossypium arboreum]
8 Hb_007545_210 0.1412054424 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
9 Hb_000155_080 0.1516858486 - - guanylate-binding family protein [Populus trichocarpa]
10 Hb_170116_010 0.153632001 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
11 Hb_003636_090 0.1560617742 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
12 Hb_004254_040 0.1575710677 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
13 Hb_001780_060 0.1597213693 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
14 Hb_017111_010 0.1622461712 - - PREDICTED: inositol transporter 4 [Jatropha curcas]
15 Hb_002506_110 0.1643689211 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
16 Hb_002388_060 0.1650947719 - - conserved hypothetical protein [Ricinus communis]
17 Hb_098315_100 0.1663791491 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
18 Hb_000603_200 0.1678658063 - - PREDICTED: myosin-15 [Jatropha curcas]
19 Hb_009193_130 0.171566466 - - hypothetical protein RCOM_1620550 [Ricinus communis]
20 Hb_007158_030 0.1720122429 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_126669_010 Hb_126669_010 Hb_000928_230 Hb_000928_230 Hb_126669_010--Hb_000928_230 Hb_000523_020 Hb_000523_020 Hb_126669_010--Hb_000523_020 Hb_000270_400 Hb_000270_400 Hb_126669_010--Hb_000270_400 Hb_002627_060 Hb_002627_060 Hb_126669_010--Hb_002627_060 Hb_000172_610 Hb_000172_610 Hb_126669_010--Hb_000172_610 Hb_000376_150 Hb_000376_150 Hb_126669_010--Hb_000376_150 Hb_000928_230--Hb_000270_400 Hb_000928_230--Hb_000523_020 Hb_000928_230--Hb_002627_060 Hb_000928_230--Hb_000172_610 Hb_170116_010 Hb_170116_010 Hb_000928_230--Hb_170116_010 Hb_000523_020--Hb_000270_400 Hb_007545_210 Hb_007545_210 Hb_000523_020--Hb_007545_210 Hb_002388_060 Hb_002388_060 Hb_000523_020--Hb_002388_060 Hb_000523_020--Hb_170116_010 Hb_000523_020--Hb_002627_060 Hb_000270_400--Hb_007545_210 Hb_004254_040 Hb_004254_040 Hb_000270_400--Hb_004254_040 Hb_000270_400--Hb_000172_610 Hb_000270_400--Hb_002627_060 Hb_002627_060--Hb_000172_610 Hb_000155_080 Hb_000155_080 Hb_002627_060--Hb_000155_080 Hb_009193_130 Hb_009193_130 Hb_002627_060--Hb_009193_130 Hb_098315_100 Hb_098315_100 Hb_002627_060--Hb_098315_100 Hb_000172_610--Hb_000155_080 Hb_000172_610--Hb_004254_040 Hb_000172_610--Hb_098315_100 Hb_000376_150--Hb_098315_100 Hb_002506_110 Hb_002506_110 Hb_000376_150--Hb_002506_110 Hb_003304_080 Hb_003304_080 Hb_000376_150--Hb_003304_080 Hb_000376_150--Hb_002627_060 Hb_000376_150--Hb_000172_610 Hb_000050_120 Hb_000050_120 Hb_000376_150--Hb_000050_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
500.376 2.43059 1.39069 4.38994 198.203 272.861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
235.851 54.6522 74.6069 3.54428 0.219728

CAGE analysis