Hb_126917_010

Information

Type -
Description -
Location Contig126917: 449-847
Sequence    

Annotation

kegg
ID rcu:RCOM_0613700
description hypothetical protein
nr
ID XP_012087566.1
description PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24289 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126917_010 0.0 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
2 Hb_000834_080 0.0890080163 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
3 Hb_009687_020 0.0978400747 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
4 Hb_000300_020 0.102461516 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
5 Hb_003171_030 0.1060828573 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
6 Hb_011053_030 0.1077904413 - - -
7 Hb_001269_500 0.1143251087 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
8 Hb_000032_390 0.1184653119 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
9 Hb_158092_100 0.1214554836 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
10 Hb_000023_210 0.1215472026 - - PREDICTED: protein TIC 55, chloroplastic [Jatropha curcas]
11 Hb_000264_280 0.1244021582 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
12 Hb_004055_160 0.1247061998 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
13 Hb_003494_030 0.1257584446 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
14 Hb_006420_010 0.1257803577 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
15 Hb_000951_120 0.1282928301 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
16 Hb_006829_080 0.130405909 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
17 Hb_000152_480 0.1313429853 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
18 Hb_000975_050 0.1333723148 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
19 Hb_000175_050 0.1346570807 - - -
20 Hb_000402_170 0.1348893546 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_126917_010 Hb_126917_010 Hb_000834_080 Hb_000834_080 Hb_126917_010--Hb_000834_080 Hb_009687_020 Hb_009687_020 Hb_126917_010--Hb_009687_020 Hb_000300_020 Hb_000300_020 Hb_126917_010--Hb_000300_020 Hb_003171_030 Hb_003171_030 Hb_126917_010--Hb_003171_030 Hb_011053_030 Hb_011053_030 Hb_126917_010--Hb_011053_030 Hb_001269_500 Hb_001269_500 Hb_126917_010--Hb_001269_500 Hb_000834_080--Hb_011053_030 Hb_001628_120 Hb_001628_120 Hb_000834_080--Hb_001628_120 Hb_012799_190 Hb_012799_190 Hb_000834_080--Hb_012799_190 Hb_000975_050 Hb_000975_050 Hb_000834_080--Hb_000975_050 Hb_000175_050 Hb_000175_050 Hb_000834_080--Hb_000175_050 Hb_009687_020--Hb_003171_030 Hb_006198_130 Hb_006198_130 Hb_009687_020--Hb_006198_130 Hb_158092_100 Hb_158092_100 Hb_009687_020--Hb_158092_100 Hb_004055_160 Hb_004055_160 Hb_009687_020--Hb_004055_160 Hb_009687_020--Hb_001269_500 Hb_000473_050 Hb_000473_050 Hb_009687_020--Hb_000473_050 Hb_000300_020--Hb_009687_020 Hb_000352_220 Hb_000352_220 Hb_000300_020--Hb_000352_220 Hb_000023_210 Hb_000023_210 Hb_000300_020--Hb_000023_210 Hb_000300_020--Hb_003171_030 Hb_000816_200 Hb_000816_200 Hb_000300_020--Hb_000816_200 Hb_003171_030--Hb_006198_130 Hb_000059_270 Hb_000059_270 Hb_003171_030--Hb_000059_270 Hb_003171_030--Hb_000816_200 Hb_001723_030 Hb_001723_030 Hb_003171_030--Hb_001723_030 Hb_003171_030--Hb_001269_500 Hb_011053_030--Hb_000175_050 Hb_000032_400 Hb_000032_400 Hb_011053_030--Hb_000032_400 Hb_026314_030 Hb_026314_030 Hb_011053_030--Hb_026314_030 Hb_000866_050 Hb_000866_050 Hb_011053_030--Hb_000866_050 Hb_001649_030 Hb_001649_030 Hb_001269_500--Hb_001649_030 Hb_000336_200 Hb_000336_200 Hb_001269_500--Hb_000336_200 Hb_000665_270 Hb_000665_270 Hb_001269_500--Hb_000665_270 Hb_000264_280 Hb_000264_280 Hb_001269_500--Hb_000264_280 Hb_001269_500--Hb_006198_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60909 4.0203 15.1145 13.3974 3.21844 2.88278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.40525 6.29132 1.76071 4.92209 41.7065

CAGE analysis