Hb_126933_010

Information

Type -
Description -
Location Contig126933: 25205-26679
Sequence    

Annotation

kegg
ID pop:POPTR_0013s15680g
description POPTRDRAFT_892609; hypothetical protein
nr
ID XP_012077732.1
description PREDICTED: reticulon-like protein B5 [Jatropha curcas]
swissprot
ID Q9SUT9
description Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1
trembl
ID B9I788
description Reticulon-like protein OS=Populus trichocarpa GN=POPTR_0013s15680g PE=4 SV=2
Gene Ontology
ID GO:0005789
description reticulon-like protein b5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126933_010 0.0 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
2 Hb_005976_090 0.1400718407 - - DNA binding protein, putative [Ricinus communis]
3 Hb_001386_150 0.1452055474 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
4 Hb_005050_050 0.1554445297 - - PREDICTED: wall-associated receptor kinase 5-like [Glycine max]
5 Hb_016687_010 0.1606444346 - - PREDICTED: uncharacterized protein LOC105637401 [Jatropha curcas]
6 Hb_002890_160 0.1635718948 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
7 Hb_003371_010 0.1644503984 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
8 Hb_000483_430 0.1654773314 - - -
9 Hb_005181_190 0.1670415661 - - PREDICTED: uncharacterized protein LOC105643550 [Jatropha curcas]
10 Hb_003119_130 0.1674713546 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
11 Hb_000037_200 0.1685516144 - - RNA binding protein, putative [Ricinus communis]
12 Hb_003177_050 0.1688541651 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Populus euphratica]
13 Hb_000283_030 0.1716257986 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
14 Hb_000239_050 0.1741434907 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
15 Hb_078582_010 0.1764588482 - - hypothetical protein POPTR_0005s01620g [Populus trichocarpa]
16 Hb_000041_210 0.1765588366 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
17 Hb_012389_010 0.1769051318 - - hypothetical protein POPTR_0018s11820g [Populus trichocarpa]
18 Hb_000697_020 0.1769842979 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
19 Hb_002107_040 0.1771510897 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
20 Hb_010584_020 0.1778533245 - - PREDICTED: probable polygalacturonase [Jatropha curcas]

Gene co-expression network

sample Hb_126933_010 Hb_126933_010 Hb_005976_090 Hb_005976_090 Hb_126933_010--Hb_005976_090 Hb_001386_150 Hb_001386_150 Hb_126933_010--Hb_001386_150 Hb_005050_050 Hb_005050_050 Hb_126933_010--Hb_005050_050 Hb_016687_010 Hb_016687_010 Hb_126933_010--Hb_016687_010 Hb_002890_160 Hb_002890_160 Hb_126933_010--Hb_002890_160 Hb_003371_010 Hb_003371_010 Hb_126933_010--Hb_003371_010 Hb_005976_090--Hb_016687_010 Hb_005976_090--Hb_003371_010 Hb_004920_020 Hb_004920_020 Hb_005976_090--Hb_004920_020 Hb_124677_010 Hb_124677_010 Hb_005976_090--Hb_124677_010 Hb_000950_020 Hb_000950_020 Hb_005976_090--Hb_000950_020 Hb_001386_150--Hb_005050_050 Hb_010683_060 Hb_010683_060 Hb_001386_150--Hb_010683_060 Hb_007101_270 Hb_007101_270 Hb_001386_150--Hb_007101_270 Hb_002107_040 Hb_002107_040 Hb_001386_150--Hb_002107_040 Hb_001386_150--Hb_005976_090 Hb_005050_050--Hb_007101_270 Hb_003020_070 Hb_003020_070 Hb_005050_050--Hb_003020_070 Hb_000212_270 Hb_000212_270 Hb_005050_050--Hb_000212_270 Hb_005050_050--Hb_002890_160 Hb_010683_070 Hb_010683_070 Hb_005050_050--Hb_010683_070 Hb_000697_020 Hb_000697_020 Hb_016687_010--Hb_000697_020 Hb_003119_130 Hb_003119_130 Hb_016687_010--Hb_003119_130 Hb_003141_060 Hb_003141_060 Hb_016687_010--Hb_003141_060 Hb_008878_020 Hb_008878_020 Hb_016687_010--Hb_008878_020 Hb_001172_150 Hb_001172_150 Hb_016687_010--Hb_001172_150 Hb_061126_010 Hb_061126_010 Hb_016687_010--Hb_061126_010 Hb_003531_050 Hb_003531_050 Hb_002890_160--Hb_003531_050 Hb_001352_030 Hb_001352_030 Hb_002890_160--Hb_001352_030 Hb_002890_160--Hb_003020_070 Hb_010534_040 Hb_010534_040 Hb_002890_160--Hb_010534_040 Hb_000037_200 Hb_000037_200 Hb_002890_160--Hb_000037_200 Hb_000922_160 Hb_000922_160 Hb_002890_160--Hb_000922_160 Hb_000962_090 Hb_000962_090 Hb_003371_010--Hb_000962_090 Hb_001014_240 Hb_001014_240 Hb_003371_010--Hb_001014_240 Hb_000128_040 Hb_000128_040 Hb_003371_010--Hb_000128_040 Hb_003371_010--Hb_000950_020 Hb_015044_010 Hb_015044_010 Hb_003371_010--Hb_015044_010 Hb_003038_230 Hb_003038_230 Hb_003371_010--Hb_003038_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.030627 0.0309649 0.210542 0.0837846 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0449436 0.221878

CAGE analysis