Hb_126933_020

Information

Type -
Description -
Location Contig126933: 26853-30206
Sequence    

Annotation

kegg
ID rcu:RCOM_1027400
description hypothetical protein
nr
ID XP_012077739.1
description PREDICTED: uncharacterized protein LOC105638525 [Jatropha curcas]
swissprot
ID P72777
description Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1780 PE=3 SV=1
trembl
ID A0A067LMM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17271 PE=4 SV=1
Gene Ontology
ID GO:0009507
description ycf54-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08266: 26872-30187 , PASA_asmbl_08267: 28428-28776
cDNA
(Sanger)
(ID:Location)		 002_N06.ab1: 27299-30187 , 040_J15.ab1: 27300-30187 , 045_O11.ab1: 27330-30187 , 048_K14.ab1: 27351-30187

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126933_020 0.0 - - PREDICTED: uncharacterized protein LOC105638525 [Jatropha curcas]
2 Hb_004855_070 0.1008339551 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
3 Hb_003416_020 0.1044487492 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
4 Hb_005488_190 0.1118304222 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
5 Hb_150651_020 0.1145830739 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
6 Hb_004208_090 0.1212732081 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
7 Hb_001365_030 0.134086527 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
8 Hb_000768_120 0.1358651695 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
9 Hb_000679_080 0.1358818007 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
10 Hb_000134_040 0.1378586002 - - PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]
11 Hb_000283_030 0.1402880673 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
12 Hb_006681_020 0.1442105057 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
13 Hb_002107_040 0.1443970044 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
14 Hb_004705_070 0.1448693715 - - PREDICTED: uncharacterized protein LOC105647312 isoform X1 [Jatropha curcas]
15 Hb_001001_120 0.1470418902 - - protein phosphatase, putative [Ricinus communis]
16 Hb_001597_020 0.1478352825 - - PREDICTED: uncharacterized protein LOC105629846 isoform X2 [Jatropha curcas]
17 Hb_172426_060 0.1486538714 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
18 Hb_002498_300 0.1488500804 - - BnaC04g50140D [Brassica napus]
19 Hb_007479_010 0.148915383 - - Root phototropism protein, putative [Ricinus communis]
20 Hb_001227_140 0.1500505049 - - PREDICTED: protein ROS1 [Jatropha curcas]

Gene co-expression network

sample Hb_126933_020 Hb_126933_020 Hb_004855_070 Hb_004855_070 Hb_126933_020--Hb_004855_070 Hb_003416_020 Hb_003416_020 Hb_126933_020--Hb_003416_020 Hb_005488_190 Hb_005488_190 Hb_126933_020--Hb_005488_190 Hb_150651_020 Hb_150651_020 Hb_126933_020--Hb_150651_020 Hb_004208_090 Hb_004208_090 Hb_126933_020--Hb_004208_090 Hb_001365_030 Hb_001365_030 Hb_126933_020--Hb_001365_030 Hb_006681_020 Hb_006681_020 Hb_004855_070--Hb_006681_020 Hb_000768_120 Hb_000768_120 Hb_004855_070--Hb_000768_120 Hb_004855_070--Hb_004208_090 Hb_006583_030 Hb_006583_030 Hb_004855_070--Hb_006583_030 Hb_001999_260 Hb_001999_260 Hb_004855_070--Hb_001999_260 Hb_000134_040 Hb_000134_040 Hb_004855_070--Hb_000134_040 Hb_000679_080 Hb_000679_080 Hb_003416_020--Hb_000679_080 Hb_002662_110 Hb_002662_110 Hb_003416_020--Hb_002662_110 Hb_093077_010 Hb_093077_010 Hb_003416_020--Hb_093077_010 Hb_000283_030 Hb_000283_030 Hb_003416_020--Hb_000283_030 Hb_007765_130 Hb_007765_130 Hb_003416_020--Hb_007765_130 Hb_007803_040 Hb_007803_040 Hb_005488_190--Hb_007803_040 Hb_002811_250 Hb_002811_250 Hb_005488_190--Hb_002811_250 Hb_005488_190--Hb_006681_020 Hb_009393_130 Hb_009393_130 Hb_005488_190--Hb_009393_130 Hb_002495_090 Hb_002495_090 Hb_005488_190--Hb_002495_090 Hb_000062_480 Hb_000062_480 Hb_005488_190--Hb_000062_480 Hb_001001_120 Hb_001001_120 Hb_150651_020--Hb_001001_120 Hb_001597_020 Hb_001597_020 Hb_150651_020--Hb_001597_020 Hb_004705_070 Hb_004705_070 Hb_150651_020--Hb_004705_070 Hb_004635_070 Hb_004635_070 Hb_150651_020--Hb_004635_070 Hb_007894_190 Hb_007894_190 Hb_150651_020--Hb_007894_190 Hb_004208_090--Hb_001999_260 Hb_000934_260 Hb_000934_260 Hb_004208_090--Hb_000934_260 Hb_004117_150 Hb_004117_150 Hb_004208_090--Hb_004117_150 Hb_004208_090--Hb_006681_020 Hb_004208_090--Hb_000768_120 Hb_010632_020 Hb_010632_020 Hb_001365_030--Hb_010632_020 Hb_001365_030--Hb_007765_130 Hb_000940_030 Hb_000940_030 Hb_001365_030--Hb_000940_030 Hb_001365_030--Hb_000679_080 Hb_002044_160 Hb_002044_160 Hb_001365_030--Hb_002044_160 Hb_003053_070 Hb_003053_070 Hb_001365_030--Hb_003053_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.57586 6.90461 56.8951 19.8204 3.08405 4.99937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.510471 0.401569 0.964648 7.82407 46.3435

CAGE analysis