Hb_126976_010

Information

Type -
Description -
Location Contig126976: 1992-4978
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08269: 1775-2538
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126976_010 0.0 - - -
2 Hb_002874_110 0.0706487274 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
3 Hb_000237_040 0.0756676225 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
4 Hb_000890_070 0.0887142403 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
5 Hb_000809_230 0.0889187294 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]
6 Hb_000976_100 0.0890757887 - - eukaryotic translation elongation factor, putative [Ricinus communis]
7 Hb_004679_030 0.0895313155 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
8 Hb_002749_060 0.08956021 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
9 Hb_000359_210 0.0916930898 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003340_010 0.0920430633 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
11 Hb_003544_160 0.0941643488 - - -
12 Hb_008511_020 0.0944268841 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
13 Hb_138585_080 0.0945470091 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
14 Hb_006663_060 0.0949006044 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
15 Hb_012330_010 0.0957310656 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
16 Hb_027445_020 0.0964030423 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
17 Hb_015292_060 0.0970468971 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
18 Hb_006839_010 0.0971637532 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
19 Hb_001801_020 0.0980359217 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
20 Hb_000803_320 0.0982439679 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]

Gene co-expression network

sample Hb_126976_010 Hb_126976_010 Hb_002874_110 Hb_002874_110 Hb_126976_010--Hb_002874_110 Hb_000237_040 Hb_000237_040 Hb_126976_010--Hb_000237_040 Hb_000890_070 Hb_000890_070 Hb_126976_010--Hb_000890_070 Hb_000809_230 Hb_000809_230 Hb_126976_010--Hb_000809_230 Hb_000976_100 Hb_000976_100 Hb_126976_010--Hb_000976_100 Hb_004679_030 Hb_004679_030 Hb_126976_010--Hb_004679_030 Hb_002749_060 Hb_002749_060 Hb_002874_110--Hb_002749_060 Hb_000803_320 Hb_000803_320 Hb_002874_110--Hb_000803_320 Hb_073171_070 Hb_073171_070 Hb_002874_110--Hb_073171_070 Hb_006663_060 Hb_006663_060 Hb_002874_110--Hb_006663_060 Hb_011819_020 Hb_011819_020 Hb_002874_110--Hb_011819_020 Hb_009288_020 Hb_009288_020 Hb_002874_110--Hb_009288_020 Hb_000237_040--Hb_000976_100 Hb_027445_020 Hb_027445_020 Hb_000237_040--Hb_027445_020 Hb_001369_360 Hb_001369_360 Hb_000237_040--Hb_001369_360 Hb_000237_050 Hb_000237_050 Hb_000237_040--Hb_000237_050 Hb_055062_040 Hb_055062_040 Hb_000237_040--Hb_055062_040 Hb_000890_070--Hb_002749_060 Hb_004450_070 Hb_004450_070 Hb_000890_070--Hb_004450_070 Hb_004048_120 Hb_004048_120 Hb_000890_070--Hb_004048_120 Hb_003280_020 Hb_003280_020 Hb_000890_070--Hb_003280_020 Hb_003340_010 Hb_003340_010 Hb_000890_070--Hb_003340_010 Hb_000890_070--Hb_002874_110 Hb_000809_230--Hb_004679_030 Hb_001377_350 Hb_001377_350 Hb_000809_230--Hb_001377_350 Hb_003544_050 Hb_003544_050 Hb_000809_230--Hb_003544_050 Hb_000809_230--Hb_002749_060 Hb_007994_010 Hb_007994_010 Hb_000809_230--Hb_007994_010 Hb_009296_040 Hb_009296_040 Hb_000809_230--Hb_009296_040 Hb_000976_100--Hb_027445_020 Hb_000976_100--Hb_001369_360 Hb_002025_330 Hb_002025_330 Hb_000976_100--Hb_002025_330 Hb_000363_040 Hb_000363_040 Hb_000976_100--Hb_000363_040 Hb_004019_120 Hb_004019_120 Hb_000976_100--Hb_004019_120 Hb_003544_160 Hb_003544_160 Hb_004679_030--Hb_003544_160 Hb_004679_030--Hb_009296_040 Hb_004679_030--Hb_001377_350 Hb_005582_040 Hb_005582_040 Hb_004679_030--Hb_005582_040 Hb_011228_010 Hb_011228_010 Hb_004679_030--Hb_011228_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.29793 4.90678 3.72513 8.57203 3.56779 4.74638
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.6305 1.49535 4.24528 6.18222 9.86498

CAGE analysis