Hb_127361_010

Information

Type -
Description -
Location Contig127361: 2-809
Sequence    

Annotation

kegg
ID rcu:RCOM_0766910
description (R)-limonene synthase (EC:4.2.3.20)
nr
ID XP_012075360.1
description PREDICTED: terpene synthase 10-like [Jatropha curcas]
swissprot
ID B9T536
description Terpene synthase 10 OS=Ricinus communis GN=TPS10 PE=2 SV=1
trembl
ID A0A067KK14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09482 PE=4 SV=1
Gene Ontology
ID GO:0000287
description terpene synthase 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127361_010 0.0 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
2 Hb_080126_010 0.0003401388 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
3 Hb_055002_010 0.0053778545 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
4 Hb_049490_010 0.0089307459 - - hypothetical protein VITISV_013805 [Vitis vinifera]
5 Hb_018283_010 0.0092760956 - - hypothetical protein VITISV_023498 [Vitis vinifera]
6 Hb_005352_020 0.0160228565 - - -
7 Hb_007524_040 0.0211553169 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101511096 [Cicer arietinum]
8 Hb_000917_020 0.0213314021 - - polyprotein [Citrus endogenous pararetrovirus]
9 Hb_001255_070 0.0219941688 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_003908_010 0.0227684529 - - polyprotein [Oryza australiensis]
11 Hb_005300_050 0.0230608298 - - hypothetical protein VITISV_001308 [Vitis vinifera]
12 Hb_003898_010 0.0484047376 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
13 Hb_010523_020 0.0490040966 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_002281_060 0.0512434374 - - PREDICTED: uncharacterized protein LOC104877351 [Vitis vinifera]
15 Hb_001115_060 0.0521476026 - - PREDICTED: uncharacterized protein LOC104602709 [Nelumbo nucifera]
16 Hb_000668_030 0.0526248896 - - -
17 Hb_000789_210 0.0543607106 - - PREDICTED: nudix hydrolase 8-like isoform X1 [Jatropha curcas]
18 Hb_004987_050 0.0550678214 - - -
19 Hb_000051_100 0.0568036611 - - hypothetical protein MIMGU_mgv1a025286mg [Erythranthe guttata]
20 Hb_004984_090 0.0591956478 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_127361_010 Hb_127361_010 Hb_080126_010 Hb_080126_010 Hb_127361_010--Hb_080126_010 Hb_055002_010 Hb_055002_010 Hb_127361_010--Hb_055002_010 Hb_049490_010 Hb_049490_010 Hb_127361_010--Hb_049490_010 Hb_018283_010 Hb_018283_010 Hb_127361_010--Hb_018283_010 Hb_005352_020 Hb_005352_020 Hb_127361_010--Hb_005352_020 Hb_007524_040 Hb_007524_040 Hb_127361_010--Hb_007524_040 Hb_080126_010--Hb_055002_010 Hb_080126_010--Hb_018283_010 Hb_080126_010--Hb_049490_010 Hb_080126_010--Hb_005352_020 Hb_080126_010--Hb_007524_040 Hb_055002_010--Hb_049490_010 Hb_055002_010--Hb_005352_020 Hb_055002_010--Hb_018283_010 Hb_055002_010--Hb_007524_040 Hb_049490_010--Hb_005352_020 Hb_049490_010--Hb_007524_040 Hb_000917_020 Hb_000917_020 Hb_049490_010--Hb_000917_020 Hb_018283_010--Hb_049490_010 Hb_018283_010--Hb_005352_020 Hb_018283_010--Hb_007524_040 Hb_005352_020--Hb_007524_040 Hb_005352_020--Hb_000917_020 Hb_001255_070 Hb_001255_070 Hb_005352_020--Hb_001255_070 Hb_003908_010 Hb_003908_010 Hb_005352_020--Hb_003908_010 Hb_005300_050 Hb_005300_050 Hb_005352_020--Hb_005300_050 Hb_007524_040--Hb_000917_020 Hb_007524_040--Hb_001255_070 Hb_007524_040--Hb_003908_010 Hb_007524_040--Hb_005300_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0720197 2.03019

CAGE analysis