Hb_127372_010

Information

Type -
Description -
Location Contig127372: 572-3827
Sequence    

Annotation

kegg
ID pop:POPTR_0017s06310g
description hypothetical protein
nr
ID XP_006372927.1
description hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
swissprot
ID D7SFH9
description Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 OS=Arabidopsis thaliana GN=GDPDL2 PE=1 SV=1
trembl
ID U5FKH6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s06310g PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127372_010 0.0 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
2 Hb_001361_010 0.0983140524 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
3 Hb_027065_010 0.1037068359 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
4 Hb_116420_050 0.1214255637 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
5 Hb_000953_180 0.126403948 - - -
6 Hb_003207_220 0.1290639407 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
7 Hb_000604_080 0.1320211361 - - Fgenesh protein [Medicago truncatula]
8 Hb_107174_010 0.13892901 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_002999_150 0.1401108465 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
10 Hb_006478_140 0.1407337357 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
11 Hb_002435_010 0.141526133 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
12 Hb_000192_030 0.1420905533 - - PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]
13 Hb_155896_010 0.1422210167 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
14 Hb_000251_170 0.1456834139 - - leucine-rich repeat transmembrane protein kinase, putative [Ricinus communis]
15 Hb_000574_270 0.1471892451 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
16 Hb_000280_100 0.1490771274 - - hypothetical protein JCGZ_13378 [Jatropha curcas]
17 Hb_000365_110 0.1537693501 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
18 Hb_000042_020 0.1565309635 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
19 Hb_004551_010 0.1583222735 - - tryptophan synthase beta chain, putative [Ricinus communis]
20 Hb_000340_070 0.1596849702 - - PREDICTED: CSC1-like protein At4g02900 [Jatropha curcas]

Gene co-expression network

sample Hb_127372_010 Hb_127372_010 Hb_001361_010 Hb_001361_010 Hb_127372_010--Hb_001361_010 Hb_027065_010 Hb_027065_010 Hb_127372_010--Hb_027065_010 Hb_116420_050 Hb_116420_050 Hb_127372_010--Hb_116420_050 Hb_000953_180 Hb_000953_180 Hb_127372_010--Hb_000953_180 Hb_003207_220 Hb_003207_220 Hb_127372_010--Hb_003207_220 Hb_000604_080 Hb_000604_080 Hb_127372_010--Hb_000604_080 Hb_104641_010 Hb_104641_010 Hb_001361_010--Hb_104641_010 Hb_001361_010--Hb_027065_010 Hb_074672_010 Hb_074672_010 Hb_001361_010--Hb_074672_010 Hb_086614_010 Hb_086614_010 Hb_001361_010--Hb_086614_010 Hb_001361_010--Hb_116420_050 Hb_027065_010--Hb_116420_050 Hb_027065_010--Hb_003207_220 Hb_000866_430 Hb_000866_430 Hb_027065_010--Hb_000866_430 Hb_000042_020 Hb_000042_020 Hb_027065_010--Hb_000042_020 Hb_116420_050--Hb_003207_220 Hb_116420_050--Hb_000042_020 Hb_007919_070 Hb_007919_070 Hb_116420_050--Hb_007919_070 Hb_116420_050--Hb_000866_430 Hb_000192_030 Hb_000192_030 Hb_000953_180--Hb_000192_030 Hb_000365_110 Hb_000365_110 Hb_000953_180--Hb_000365_110 Hb_000574_270 Hb_000574_270 Hb_000953_180--Hb_000574_270 Hb_100395_010 Hb_100395_010 Hb_000953_180--Hb_100395_010 Hb_008948_070 Hb_008948_070 Hb_000953_180--Hb_008948_070 Hb_000483_050 Hb_000483_050 Hb_000953_180--Hb_000483_050 Hb_002999_150 Hb_002999_150 Hb_003207_220--Hb_002999_150 Hb_052764_120 Hb_052764_120 Hb_003207_220--Hb_052764_120 Hb_002435_010 Hb_002435_010 Hb_003207_220--Hb_002435_010 Hb_002267_010 Hb_002267_010 Hb_003207_220--Hb_002267_010 Hb_107174_010 Hb_107174_010 Hb_003207_220--Hb_107174_010 Hb_010578_020 Hb_010578_020 Hb_003207_220--Hb_010578_020 Hb_006478_140 Hb_006478_140 Hb_000604_080--Hb_006478_140 Hb_000340_070 Hb_000340_070 Hb_000604_080--Hb_000340_070 Hb_038601_010 Hb_038601_010 Hb_000604_080--Hb_038601_010 Hb_002435_070 Hb_002435_070 Hb_000604_080--Hb_002435_070 Hb_004725_040 Hb_004725_040 Hb_000604_080--Hb_004725_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.25462 3.02892 0.292882 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.109923 0.0523275

CAGE analysis