Hb_127400_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig127400: 2-1995
Sequence    

Annotation

kegg
ID rcu:RCOM_1331730
description phosphoprotein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_002521792.1
description phosphoprotein phosphatase, putative [Ricinus communis]
swissprot
ID Q8RXS5
description Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2
trembl
ID B9S723
description Phosphoprotein phosphatase, putative OS=Ricinus communis GN=RCOM_1331730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08365: 1621-3744
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127400_010 0.0 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
2 Hb_013607_010 0.1118102758 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
3 Hb_019654_010 0.1233876738 - - multicopper oxidase, putative [Ricinus communis]
4 Hb_041145_010 0.1313642465 - - hypothetical protein CISIN_1g021653mg [Citrus sinensis]
5 Hb_001568_120 0.1385042385 - - hypothetical protein JCGZ_05918 [Jatropha curcas]
6 Hb_000133_060 0.1427378437 - - PREDICTED: protein YLS9-like [Jatropha curcas]
7 Hb_133508_010 0.1455809435 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
8 Hb_009510_050 0.1466186747 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003602_090 0.1477174882 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
10 Hb_001846_040 0.1481953458 - - cytochrome P450, putative [Ricinus communis]
11 Hb_022206_030 0.1501291389 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
12 Hb_007407_010 0.1506641464 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 74 [Populus euphratica]
13 Hb_000110_330 0.1509895536 - - PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]
14 Hb_133845_010 0.1528198838 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
15 Hb_001897_030 0.1542405277 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
16 Hb_082870_010 0.1547452664 - - Disease resistance protein RFL1, putative [Ricinus communis]
17 Hb_005605_030 0.1551875337 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
18 Hb_117127_010 0.1562846746 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH106 [Jatropha curcas]
19 Hb_009683_010 0.1565891345 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
20 Hb_003582_020 0.1578514414 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_127400_010 Hb_127400_010 Hb_013607_010 Hb_013607_010 Hb_127400_010--Hb_013607_010 Hb_019654_010 Hb_019654_010 Hb_127400_010--Hb_019654_010 Hb_041145_010 Hb_041145_010 Hb_127400_010--Hb_041145_010 Hb_001568_120 Hb_001568_120 Hb_127400_010--Hb_001568_120 Hb_000133_060 Hb_000133_060 Hb_127400_010--Hb_000133_060 Hb_133508_010 Hb_133508_010 Hb_127400_010--Hb_133508_010 Hb_002234_200 Hb_002234_200 Hb_013607_010--Hb_002234_200 Hb_000363_110 Hb_000363_110 Hb_013607_010--Hb_000363_110 Hb_013607_010--Hb_001568_120 Hb_029238_020 Hb_029238_020 Hb_013607_010--Hb_029238_020 Hb_009510_050 Hb_009510_050 Hb_013607_010--Hb_009510_050 Hb_001846_040 Hb_001846_040 Hb_019654_010--Hb_001846_040 Hb_011287_020 Hb_011287_020 Hb_019654_010--Hb_011287_020 Hb_001477_080 Hb_001477_080 Hb_019654_010--Hb_001477_080 Hb_003582_020 Hb_003582_020 Hb_019654_010--Hb_003582_020 Hb_001289_030 Hb_001289_030 Hb_019654_010--Hb_001289_030 Hb_002922_010 Hb_002922_010 Hb_019654_010--Hb_002922_010 Hb_000110_330 Hb_000110_330 Hb_041145_010--Hb_000110_330 Hb_117127_010 Hb_117127_010 Hb_041145_010--Hb_117127_010 Hb_041145_010--Hb_001568_120 Hb_133845_010 Hb_133845_010 Hb_041145_010--Hb_133845_010 Hb_003602_090 Hb_003602_090 Hb_041145_010--Hb_003602_090 Hb_000000_070 Hb_000000_070 Hb_001568_120--Hb_000000_070 Hb_001568_120--Hb_117127_010 Hb_006698_020 Hb_006698_020 Hb_001568_120--Hb_006698_020 Hb_029866_050 Hb_029866_050 Hb_001568_120--Hb_029866_050 Hb_009683_010 Hb_009683_010 Hb_001568_120--Hb_009683_010 Hb_007407_010 Hb_007407_010 Hb_000133_060--Hb_007407_010 Hb_002205_260 Hb_002205_260 Hb_000133_060--Hb_002205_260 Hb_000133_060--Hb_000110_330 Hb_012545_080 Hb_012545_080 Hb_000133_060--Hb_012545_080 Hb_019961_010 Hb_019961_010 Hb_000133_060--Hb_019961_010 Hb_174380_010 Hb_174380_010 Hb_000133_060--Hb_174380_010 Hb_024357_010 Hb_024357_010 Hb_133508_010--Hb_024357_010 Hb_002239_030 Hb_002239_030 Hb_133508_010--Hb_002239_030 Hb_024857_010 Hb_024857_010 Hb_133508_010--Hb_024857_010 Hb_007137_030 Hb_007137_030 Hb_133508_010--Hb_007137_030 Hb_006911_060 Hb_006911_060 Hb_133508_010--Hb_006911_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.208402 14.4404 3.99578 5.24043 0.302655 0.159781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0477054 0 0.138558 1.89908 0.154042

CAGE analysis