Hb_127416_010

Information

Type -
Description -
Location Contig127416: 2628-10538
Sequence    

Annotation

kegg
ID rcu:RCOM_1419770
description LysM domain GPI-anchored protein 2 precursor, putative
nr
ID XP_002525811.1
description LysM domain GPI-anchored protein 2 precursor, putative [Ricinus communis]
swissprot
ID O23006
description LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis thaliana GN=LYM2 PE=1 SV=1
trembl
ID B9SIJ2
description LysM domain GPI-anchored protein 2, putative OS=Ricinus communis GN=RCOM_1419770 PE=4 SV=1
Gene Ontology
ID GO:0006950
description lysm domain-containing gpi-anchored protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08368: 6642-10528 , PASA_asmbl_08369: 2813-10528 , PASA_asmbl_08370: 8004-8326
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127416_010 0.0 - - LysM domain GPI-anchored protein 2 precursor, putative [Ricinus communis]
2 Hb_023278_030 0.110012401 - - zinc finger protein, putative [Ricinus communis]
3 Hb_183086_070 0.1358821146 - - PREDICTED: mitochondrial chaperone BCS1-like [Jatropha curcas]
4 Hb_000002_350 0.1368864951 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
5 Hb_012760_090 0.1385641543 - - Aspartic proteinase-like protein 1 [Morus notabilis]
6 Hb_000028_490 0.1389382963 - - calmodulin-like protein 6a [Populus trichocarpa]
7 Hb_007044_220 0.145514915 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
8 Hb_005333_080 0.1456722634 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005694_180 0.1483208759 - - PREDICTED: cytochrome b5 [Jatropha curcas]
10 Hb_003710_020 0.1506842829 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
11 Hb_000529_040 0.1531921751 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
12 Hb_000307_220 0.1572782319 - - oxidoreductase family protein [Populus trichocarpa]
13 Hb_002641_160 0.163220251 - - conserved hypothetical protein [Ricinus communis]
14 Hb_034507_060 0.164749859 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
15 Hb_000000_480 0.1671254421 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
16 Hb_001022_050 0.1677993547 - - hypothetical protein POPTR_0016s07780g [Populus trichocarpa]
17 Hb_005545_020 0.1688621344 - - endo beta n-acetylglucosaminidase, putative [Ricinus communis]
18 Hb_023226_030 0.1713913592 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
19 Hb_172706_020 0.1725253972 - - PREDICTED: protein ABIL2 [Jatropha curcas]
20 Hb_143766_080 0.172729737 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_127416_010 Hb_127416_010 Hb_023278_030 Hb_023278_030 Hb_127416_010--Hb_023278_030 Hb_183086_070 Hb_183086_070 Hb_127416_010--Hb_183086_070 Hb_000002_350 Hb_000002_350 Hb_127416_010--Hb_000002_350 Hb_012760_090 Hb_012760_090 Hb_127416_010--Hb_012760_090 Hb_000028_490 Hb_000028_490 Hb_127416_010--Hb_000028_490 Hb_007044_220 Hb_007044_220 Hb_127416_010--Hb_007044_220 Hb_023278_030--Hb_000002_350 Hb_001022_050 Hb_001022_050 Hb_023278_030--Hb_001022_050 Hb_005545_020 Hb_005545_020 Hb_023278_030--Hb_005545_020 Hb_002477_100 Hb_002477_100 Hb_023278_030--Hb_002477_100 Hb_000529_040 Hb_000529_040 Hb_023278_030--Hb_000529_040 Hb_183086_070--Hb_000028_490 Hb_002284_080 Hb_002284_080 Hb_183086_070--Hb_002284_080 Hb_003710_020 Hb_003710_020 Hb_183086_070--Hb_003710_020 Hb_183086_070--Hb_007044_220 Hb_080477_080 Hb_080477_080 Hb_183086_070--Hb_080477_080 Hb_000731_210 Hb_000731_210 Hb_000002_350--Hb_000731_210 Hb_005542_030 Hb_005542_030 Hb_000002_350--Hb_005542_030 Hb_003299_020 Hb_003299_020 Hb_000002_350--Hb_003299_020 Hb_000002_350--Hb_005545_020 Hb_002641_160 Hb_002641_160 Hb_012760_090--Hb_002641_160 Hb_010050_020 Hb_010050_020 Hb_012760_090--Hb_010050_020 Hb_005333_080 Hb_005333_080 Hb_012760_090--Hb_005333_080 Hb_034507_060 Hb_034507_060 Hb_012760_090--Hb_034507_060 Hb_004218_130 Hb_004218_130 Hb_012760_090--Hb_004218_130 Hb_000318_170 Hb_000318_170 Hb_012760_090--Hb_000318_170 Hb_001780_030 Hb_001780_030 Hb_000028_490--Hb_001780_030 Hb_000028_490--Hb_005333_080 Hb_000032_250 Hb_000032_250 Hb_000028_490--Hb_000032_250 Hb_000028_490--Hb_007044_220 Hb_003875_040 Hb_003875_040 Hb_007044_220--Hb_003875_040 Hb_005839_030 Hb_005839_030 Hb_007044_220--Hb_005839_030 Hb_002592_050 Hb_002592_050 Hb_007044_220--Hb_002592_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03693 10.8165 25.3975 25.3338 0.824489 0.998593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14054 1.15494 4.78696 16.4258 4.96217

CAGE analysis