Hb_127552_040

Information

Type -
Description -
Location Contig127552: 45139-59134
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012872mg
description hypothetical protein
nr
ID XP_010087272.1
description Uncharacterized protein L484_000643 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9QY21
description Uncharacterized protein OS=Morus notabilis GN=L484_000643 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08402: 46894-84587 , PASA_asmbl_08403: 51248-51676
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127552_040 0.0 - - Uncharacterized protein L484_000643 [Morus notabilis]
2 Hb_188126_010 0.0916108729 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like isoform X3 [Jatropha curcas]
3 Hb_002909_090 0.0916894389 - - PREDICTED: 4-alpha-glucanotransferase DPE2 [Jatropha curcas]
4 Hb_000640_100 0.0929990265 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_005801_020 0.0969339025 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
6 Hb_000027_190 0.0980285496 - - PREDICTED: uncharacterized protein LOC105642057 isoform X1 [Jatropha curcas]
7 Hb_000661_030 0.1006571937 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
8 Hb_000005_190 0.1008975444 - - hypothetical protein JCGZ_05438 [Jatropha curcas]
9 Hb_000008_290 0.1039202912 - - PREDICTED: protein SAND [Jatropha curcas]
10 Hb_008387_020 0.105380205 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
11 Hb_012733_030 0.1069404278 - - hypothetical protein OsI_15243 [Oryza sativa Indica Group]
12 Hb_000252_050 0.1076696602 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
13 Hb_000780_190 0.1081661297 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
14 Hb_004545_090 0.1084626786 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001449_040 0.1088071156 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
16 Hb_028872_070 0.1092197128 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
17 Hb_002092_130 0.1098181649 - - PREDICTED: protein CASP-like [Oryza brachyantha]
18 Hb_007441_130 0.1102243664 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_001062_010 0.1108144146 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
20 Hb_011310_160 0.1108771572 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_127552_040 Hb_127552_040 Hb_188126_010 Hb_188126_010 Hb_127552_040--Hb_188126_010 Hb_002909_090 Hb_002909_090 Hb_127552_040--Hb_002909_090 Hb_000640_100 Hb_000640_100 Hb_127552_040--Hb_000640_100 Hb_005801_020 Hb_005801_020 Hb_127552_040--Hb_005801_020 Hb_000027_190 Hb_000027_190 Hb_127552_040--Hb_000027_190 Hb_000661_030 Hb_000661_030 Hb_127552_040--Hb_000661_030 Hb_000005_190 Hb_000005_190 Hb_188126_010--Hb_000005_190 Hb_001062_010 Hb_001062_010 Hb_188126_010--Hb_001062_010 Hb_188126_010--Hb_000661_030 Hb_001655_060 Hb_001655_060 Hb_188126_010--Hb_001655_060 Hb_007805_010 Hb_007805_010 Hb_188126_010--Hb_007805_010 Hb_009976_020 Hb_009976_020 Hb_188126_010--Hb_009976_020 Hb_002909_090--Hb_000640_100 Hb_000740_100 Hb_000740_100 Hb_002909_090--Hb_000740_100 Hb_002815_030 Hb_002815_030 Hb_002909_090--Hb_002815_030 Hb_001452_220 Hb_001452_220 Hb_002909_090--Hb_001452_220 Hb_003498_120 Hb_003498_120 Hb_002909_090--Hb_003498_120 Hb_004545_090 Hb_004545_090 Hb_002909_090--Hb_004545_090 Hb_000261_100 Hb_000261_100 Hb_000640_100--Hb_000261_100 Hb_000640_100--Hb_004545_090 Hb_000780_190 Hb_000780_190 Hb_000640_100--Hb_000780_190 Hb_008024_030 Hb_008024_030 Hb_000640_100--Hb_008024_030 Hb_000815_170 Hb_000815_170 Hb_005801_020--Hb_000815_170 Hb_156279_010 Hb_156279_010 Hb_005801_020--Hb_156279_010 Hb_135572_010 Hb_135572_010 Hb_005801_020--Hb_135572_010 Hb_005801_020--Hb_000661_030 Hb_012098_070 Hb_012098_070 Hb_005801_020--Hb_012098_070 Hb_006618_050 Hb_006618_050 Hb_005801_020--Hb_006618_050 Hb_000027_190--Hb_000661_030 Hb_000679_020 Hb_000679_020 Hb_000027_190--Hb_000679_020 Hb_001435_030 Hb_001435_030 Hb_000027_190--Hb_001435_030 Hb_000027_190--Hb_000005_190 Hb_010710_070 Hb_010710_070 Hb_000027_190--Hb_010710_070 Hb_007441_130 Hb_007441_130 Hb_000027_190--Hb_007441_130 Hb_000661_030--Hb_000679_020 Hb_001259_020 Hb_001259_020 Hb_000661_030--Hb_001259_020 Hb_000661_030--Hb_000815_170 Hb_000906_100 Hb_000906_100 Hb_000661_030--Hb_000906_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8013 7.53197 9.99516 9.31335 13.8482 18.0734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.3042 4.74649 8.31382 20.2634 20.0745

CAGE analysis