Hb_127743_010

Information

Type -
Description -
Location Contig127743: 25647-42944
Sequence    

Annotation

kegg
ID rcu:RCOM_0415020
description hypothetical protein
nr
ID XP_012074165.1
description PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
swissprot
ID F4JC97
description Proteasome activator subunit 4 OS=Arabidopsis thaliana GN=PA200 PE=2 SV=2
trembl
ID A0A067KJP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09542 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08511: 25711-30084 , PASA_asmbl_08512: 30215-32193 , PASA_asmbl_08513: 32385-42837
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127743_010 0.0 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
2 Hb_003913_070 0.0665675177 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
3 Hb_001417_030 0.0726197817 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
4 Hb_000111_290 0.0730251116 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
5 Hb_029243_030 0.073899848 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
6 Hb_000340_530 0.0779285181 - - hypothetical protein VITISV_016664 [Vitis vinifera]
7 Hb_004934_050 0.0780081024 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
8 Hb_002232_360 0.0790115181 - - PREDICTED: proline iminopeptidase isoform X2 [Jatropha curcas]
9 Hb_003411_040 0.0804280028 - - unnamed protein product [Coffea canephora]
10 Hb_000406_200 0.0813532024 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
11 Hb_002411_110 0.082475261 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
12 Hb_001157_160 0.0833520777 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Jatropha curcas]
13 Hb_019863_070 0.0834134906 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
14 Hb_002989_020 0.0834335308 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
15 Hb_002456_010 0.0841485487 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
16 Hb_000152_360 0.0845849991 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP53 [Jatropha curcas]
17 Hb_000614_210 0.0849254686 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
18 Hb_000258_160 0.0854431261 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011063_050 0.085462443 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
20 Hb_071130_010 0.0864236752 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_127743_010 Hb_127743_010 Hb_003913_070 Hb_003913_070 Hb_127743_010--Hb_003913_070 Hb_001417_030 Hb_001417_030 Hb_127743_010--Hb_001417_030 Hb_000111_290 Hb_000111_290 Hb_127743_010--Hb_000111_290 Hb_029243_030 Hb_029243_030 Hb_127743_010--Hb_029243_030 Hb_000340_530 Hb_000340_530 Hb_127743_010--Hb_000340_530 Hb_004934_050 Hb_004934_050 Hb_127743_010--Hb_004934_050 Hb_003734_010 Hb_003734_010 Hb_003913_070--Hb_003734_010 Hb_003913_070--Hb_000111_290 Hb_003913_070--Hb_001417_030 Hb_001999_310 Hb_001999_310 Hb_003913_070--Hb_001999_310 Hb_001814_030 Hb_001814_030 Hb_003913_070--Hb_001814_030 Hb_003411_040 Hb_003411_040 Hb_003913_070--Hb_003411_040 Hb_001417_030--Hb_000111_290 Hb_000792_010 Hb_000792_010 Hb_001417_030--Hb_000792_010 Hb_002518_260 Hb_002518_260 Hb_001417_030--Hb_002518_260 Hb_001417_030--Hb_003411_040 Hb_000614_240 Hb_000614_240 Hb_001417_030--Hb_000614_240 Hb_004324_130 Hb_004324_130 Hb_000111_290--Hb_004324_130 Hb_002456_010 Hb_002456_010 Hb_000111_290--Hb_002456_010 Hb_000111_290--Hb_000614_240 Hb_000111_290--Hb_001999_310 Hb_000574_450 Hb_000574_450 Hb_029243_030--Hb_000574_450 Hb_029243_030--Hb_001999_310 Hb_010515_020 Hb_010515_020 Hb_029243_030--Hb_010515_020 Hb_001500_140 Hb_001500_140 Hb_029243_030--Hb_001500_140 Hb_027073_020 Hb_027073_020 Hb_029243_030--Hb_027073_020 Hb_002989_020 Hb_002989_020 Hb_029243_030--Hb_002989_020 Hb_000340_530--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_000340_530--Hb_011063_050 Hb_093458_040 Hb_093458_040 Hb_000340_530--Hb_093458_040 Hb_001679_050 Hb_001679_050 Hb_000340_530--Hb_001679_050 Hb_000116_450 Hb_000116_450 Hb_000340_530--Hb_000116_450 Hb_004109_080 Hb_004109_080 Hb_000340_530--Hb_004109_080 Hb_002477_090 Hb_002477_090 Hb_004934_050--Hb_002477_090 Hb_000340_490 Hb_000340_490 Hb_004934_050--Hb_000340_490 Hb_000920_300 Hb_000920_300 Hb_004934_050--Hb_000920_300 Hb_004934_050--Hb_002456_010 Hb_004208_050 Hb_004208_050 Hb_004934_050--Hb_004208_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.69144 14.2531 7.33683 11.4521 9.66166 10.2502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.73062 12.5432 9.1198 15.3803 12.0349

CAGE analysis