Hb_127979_010

Information

Type -
Description -
Location Contig127979: 14938-18798
Sequence    

Annotation

kegg
ID rcu:RCOM_0955760
description hypothetical protein
nr
ID XP_012066362.1
description PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LFS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23911 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08623: 14976-18722
cDNA
(Sanger)
(ID:Location)		 004_O19.ab1: 15056-16275 , 021_D03.ab1: 15056-16275 , 030_K09.ab1: 15058-16275

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127979_010 0.0 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
2 Hb_000176_140 0.0569957527 - - PREDICTED: bystin [Jatropha curcas]
3 Hb_001433_170 0.0648442908 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
4 Hb_000057_060 0.0706645782 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
5 Hb_002391_110 0.0731037348 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
6 Hb_026048_090 0.0732134547 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003404_030 0.0747919897 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
8 Hb_011316_030 0.079191033 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
9 Hb_019613_020 0.0792898285 - - phospholipase C, putative [Ricinus communis]
10 Hb_002681_140 0.0793768354 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
11 Hb_011496_010 0.0798616856 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
12 Hb_003638_140 0.0821657463 - - protein binding protein, putative [Ricinus communis]
13 Hb_000599_120 0.0844645743 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
14 Hb_002169_010 0.0852314899 - - PREDICTED: la-related protein 6B [Jatropha curcas]
15 Hb_002377_050 0.0865865267 - - Agmatine deiminase, putative [Ricinus communis]
16 Hb_005754_020 0.0868538537 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
17 Hb_000179_250 0.0885036359 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
18 Hb_006816_360 0.0897392395 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
19 Hb_000085_340 0.0902063868 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
20 Hb_002044_090 0.090729165 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_127979_010 Hb_127979_010 Hb_000176_140 Hb_000176_140 Hb_127979_010--Hb_000176_140 Hb_001433_170 Hb_001433_170 Hb_127979_010--Hb_001433_170 Hb_000057_060 Hb_000057_060 Hb_127979_010--Hb_000057_060 Hb_002391_110 Hb_002391_110 Hb_127979_010--Hb_002391_110 Hb_026048_090 Hb_026048_090 Hb_127979_010--Hb_026048_090 Hb_003404_030 Hb_003404_030 Hb_127979_010--Hb_003404_030 Hb_000179_250 Hb_000179_250 Hb_000176_140--Hb_000179_250 Hb_001776_080 Hb_001776_080 Hb_000176_140--Hb_001776_080 Hb_002044_090 Hb_002044_090 Hb_000176_140--Hb_002044_090 Hb_011316_030 Hb_011316_030 Hb_000176_140--Hb_011316_030 Hb_002681_140 Hb_002681_140 Hb_000176_140--Hb_002681_140 Hb_001433_170--Hb_000057_060 Hb_001433_170--Hb_000179_250 Hb_001433_170--Hb_000176_140 Hb_001433_170--Hb_026048_090 Hb_011609_190 Hb_011609_190 Hb_001433_170--Hb_011609_190 Hb_009510_030 Hb_009510_030 Hb_000057_060--Hb_009510_030 Hb_000057_060--Hb_003404_030 Hb_000771_140 Hb_000771_140 Hb_000057_060--Hb_000771_140 Hb_002506_010 Hb_002506_010 Hb_000057_060--Hb_002506_010 Hb_000599_120 Hb_000599_120 Hb_002391_110--Hb_000599_120 Hb_002391_110--Hb_002681_140 Hb_000085_340 Hb_000085_340 Hb_002391_110--Hb_000085_340 Hb_002391_110--Hb_026048_090 Hb_002391_110--Hb_000176_140 Hb_026048_090--Hb_009510_030 Hb_026048_090--Hb_000771_140 Hb_026048_090--Hb_000057_060 Hb_004126_010 Hb_004126_010 Hb_026048_090--Hb_004126_010 Hb_003404_030--Hb_002506_010 Hb_003404_030--Hb_009510_030 Hb_176022_020 Hb_176022_020 Hb_003404_030--Hb_176022_020 Hb_010174_130 Hb_010174_130 Hb_003404_030--Hb_010174_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
297.615 45.5925 20.1015 24.8713 260.999 322.151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
189.405 116.581 199.2 62.2169 14.6791

CAGE analysis