Hb_127993_010

Information

Type -
Description -
Location Contig127993: 181-425
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07230g
description POPTRDRAFT_866249; hypothetical protein
nr
ID XP_012074442.1
description PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10308 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127993_010 0.0 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
2 Hb_054362_010 0.0226282386 - - PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas]
3 Hb_169574_010 0.0471730544 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]
4 Hb_048874_010 0.0497174302 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
5 Hb_005799_040 0.0559908633 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
6 Hb_008246_050 0.0560370067 - - -
7 Hb_162126_010 0.1190373252 - - -
8 Hb_000430_010 0.1382376989 - - -
9 Hb_125847_010 0.1542575065 - - -
10 Hb_005285_010 0.1812741874 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
11 Hb_001956_030 0.1884761208 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Populus euphratica]
12 Hb_168311_010 0.2107005002 - - -
13 Hb_089173_010 0.2238314803 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
14 Hb_008779_010 0.2317893877 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
15 Hb_000139_440 0.232914614 - - unnamed protein product [Coffea canephora]
16 Hb_008643_010 0.2433946663 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
17 Hb_000590_020 0.2434380279 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
18 Hb_003226_290 0.2441207774 - - catalytic, putative [Ricinus communis]
19 Hb_047040_010 0.2479394416 - - integrase [Gossypium herbaceum]
20 Hb_000876_040 0.2491678004 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]

Gene co-expression network

sample Hb_127993_010 Hb_127993_010 Hb_054362_010 Hb_054362_010 Hb_127993_010--Hb_054362_010 Hb_169574_010 Hb_169574_010 Hb_127993_010--Hb_169574_010 Hb_048874_010 Hb_048874_010 Hb_127993_010--Hb_048874_010 Hb_005799_040 Hb_005799_040 Hb_127993_010--Hb_005799_040 Hb_008246_050 Hb_008246_050 Hb_127993_010--Hb_008246_050 Hb_162126_010 Hb_162126_010 Hb_127993_010--Hb_162126_010 Hb_054362_010--Hb_169574_010 Hb_054362_010--Hb_048874_010 Hb_054362_010--Hb_005799_040 Hb_054362_010--Hb_008246_050 Hb_054362_010--Hb_162126_010 Hb_169574_010--Hb_048874_010 Hb_169574_010--Hb_005799_040 Hb_169574_010--Hb_008246_050 Hb_169574_010--Hb_162126_010 Hb_048874_010--Hb_005799_040 Hb_048874_010--Hb_008246_050 Hb_048874_010--Hb_162126_010 Hb_005799_040--Hb_008246_050 Hb_005799_040--Hb_162126_010 Hb_008246_050--Hb_162126_010 Hb_000430_010 Hb_000430_010 Hb_162126_010--Hb_000430_010 Hb_125847_010 Hb_125847_010 Hb_162126_010--Hb_125847_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 21.1614 18.8664 0

CAGE analysis