Hb_128048_010

Information

Type -
Description -
Location Contig128048: 3654-6720
Sequence    

Annotation

kegg
ID rcu:RCOM_1135960
description small nuclear ribonucleoprotein U)1a,U)2b, putative
nr
ID XP_002517742.1
description small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
swissprot
ID Q8H1S6
description U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana GN=At1g06960 PE=1 SV=1
trembl
ID B9RVH3
description Small nuclear ribonucleoprotein U1a,U2b, putative OS=Ricinus communis GN=RCOM_1135960 PE=4 SV=1
Gene Ontology
ID GO:0019013
description u2 small nuclear ribonucleoprotein b -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08675: 3708-6903
cDNA
(Sanger)
(ID:Location)		 045_C07.ab1: 3708-6683

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128048_010 0.0 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
2 Hb_000926_300 0.0538104675 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
3 Hb_000000_170 0.0623729523 - - defender against cell death, putative [Ricinus communis]
4 Hb_002811_260 0.0677044175 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
5 Hb_175215_010 0.0704932121 - - hypothetical protein CISIN_1g029605mg [Citrus sinensis]
6 Hb_003878_010 0.0710107808 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
7 Hb_181288_010 0.0739181476 - - rac-GTP binding protein, putative [Ricinus communis]
8 Hb_024071_020 0.0763502097 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
9 Hb_000007_100 0.0765203308 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
10 Hb_012573_070 0.0781142605 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002890_140 0.078516316 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
12 Hb_019249_010 0.0791455698 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
13 Hb_002289_120 0.0795274448 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
14 Hb_001016_030 0.0799648442 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
15 Hb_003599_040 0.0801019468 - - unnamed protein product [Vitis vinifera]
16 Hb_002105_090 0.0801843291 - - Rab4 [Hevea brasiliensis]
17 Hb_001814_070 0.0821437452 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
18 Hb_002284_240 0.0831171939 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
19 Hb_000630_060 0.0839191632 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
20 Hb_004800_230 0.0839746608 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]

Gene co-expression network

sample Hb_128048_010 Hb_128048_010 Hb_000926_300 Hb_000926_300 Hb_128048_010--Hb_000926_300 Hb_000000_170 Hb_000000_170 Hb_128048_010--Hb_000000_170 Hb_002811_260 Hb_002811_260 Hb_128048_010--Hb_002811_260 Hb_175215_010 Hb_175215_010 Hb_128048_010--Hb_175215_010 Hb_003878_010 Hb_003878_010 Hb_128048_010--Hb_003878_010 Hb_181288_010 Hb_181288_010 Hb_128048_010--Hb_181288_010 Hb_000007_100 Hb_000007_100 Hb_000926_300--Hb_000007_100 Hb_003599_040 Hb_003599_040 Hb_000926_300--Hb_003599_040 Hb_012573_070 Hb_012573_070 Hb_000926_300--Hb_012573_070 Hb_002284_240 Hb_002284_240 Hb_000926_300--Hb_002284_240 Hb_000307_090 Hb_000307_090 Hb_000926_300--Hb_000307_090 Hb_000505_140 Hb_000505_140 Hb_000000_170--Hb_000505_140 Hb_012022_120 Hb_012022_120 Hb_000000_170--Hb_012022_120 Hb_001184_090 Hb_001184_090 Hb_000000_170--Hb_001184_090 Hb_000000_170--Hb_000926_300 Hb_002900_160 Hb_002900_160 Hb_000000_170--Hb_002900_160 Hb_021419_020 Hb_021419_020 Hb_002811_260--Hb_021419_020 Hb_005773_060 Hb_005773_060 Hb_002811_260--Hb_005773_060 Hb_001195_480 Hb_001195_480 Hb_002811_260--Hb_001195_480 Hb_005045_060 Hb_005045_060 Hb_002811_260--Hb_005045_060 Hb_001328_040 Hb_001328_040 Hb_002811_260--Hb_001328_040 Hb_009486_150 Hb_009486_150 Hb_175215_010--Hb_009486_150 Hb_001504_020 Hb_001504_020 Hb_175215_010--Hb_001504_020 Hb_004787_060 Hb_004787_060 Hb_175215_010--Hb_004787_060 Hb_175215_010--Hb_021419_020 Hb_175215_010--Hb_000926_300 Hb_007875_030 Hb_007875_030 Hb_003878_010--Hb_007875_030 Hb_001814_070 Hb_001814_070 Hb_003878_010--Hb_001814_070 Hb_001454_400 Hb_001454_400 Hb_003878_010--Hb_001454_400 Hb_002105_090 Hb_002105_090 Hb_003878_010--Hb_002105_090 Hb_004800_230 Hb_004800_230 Hb_003878_010--Hb_004800_230 Hb_019249_010 Hb_019249_010 Hb_181288_010--Hb_019249_010 Hb_004204_120 Hb_004204_120 Hb_181288_010--Hb_004204_120 Hb_033594_110 Hb_033594_110 Hb_181288_010--Hb_033594_110 Hb_002518_050 Hb_002518_050 Hb_181288_010--Hb_002518_050 Hb_181288_010--Hb_002105_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.5999 24.7128 48.9315 48.6513 64.6878 82.5412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
105.877 138.65 41.6674 43.6444 23.4482

CAGE analysis