Hb_128173_010

Information

Type -
Description -
Location Contig128173: 352-998
Sequence    

Annotation

kegg
ID sly:101265044
description uncharacterized LOC101265044
nr
ID XP_009768011.1
description PREDICTED: uncharacterized protein LOC104219073 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A0A0KFN3
description Uncharacterized protein OS=Cucumis sativus GN=Csa_6G224010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128173_010 0.0 - - PREDICTED: uncharacterized protein LOC104219073 [Nicotiana sylvestris]
2 Hb_007761_010 0.002724725 - - -
3 Hb_111332_010 0.0263576882 - - Dihydroneopterin aldolase [Morus notabilis]
4 Hb_105480_010 0.0401228738 - - -
5 Hb_005542_020 0.0638166637 - - lupus la ribonucleoprotein, putative [Ricinus communis]
6 Hb_006692_050 0.0852460016 - - Chloroplastic lipocalin [Theobroma cacao]
7 Hb_013727_010 0.1090493101 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
8 Hb_000795_010 0.136070239 - - -
9 Hb_042026_010 0.1456731291 - - RNA binding protein, putative [Ricinus communis]
10 Hb_009268_110 0.1571044087 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
11 Hb_089491_010 0.1589829396 - - -
12 Hb_000004_140 0.1915059677 - - -
13 Hb_003636_050 0.1932313845 - - PREDICTED: bark storage protein A-like [Populus euphratica]
14 Hb_076583_010 0.1977248117 - - hypothetical protein JCGZ_17827 [Jatropha curcas]
15 Hb_136856_010 0.1977373857 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
16 Hb_012340_040 0.2035424844 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase-like [Populus euphratica]
17 Hb_004829_020 0.2036959831 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_021068_020 0.2152880554 - - -
19 Hb_010997_050 0.2174520656 transcription factor TF Family: mTERF unnamed protein product [Coffea canephora]
20 Hb_098842_010 0.2283278324 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_128173_010 Hb_128173_010 Hb_007761_010 Hb_007761_010 Hb_128173_010--Hb_007761_010 Hb_111332_010 Hb_111332_010 Hb_128173_010--Hb_111332_010 Hb_105480_010 Hb_105480_010 Hb_128173_010--Hb_105480_010 Hb_005542_020 Hb_005542_020 Hb_128173_010--Hb_005542_020 Hb_006692_050 Hb_006692_050 Hb_128173_010--Hb_006692_050 Hb_013727_010 Hb_013727_010 Hb_128173_010--Hb_013727_010 Hb_007761_010--Hb_111332_010 Hb_007761_010--Hb_105480_010 Hb_007761_010--Hb_005542_020 Hb_007761_010--Hb_006692_050 Hb_007761_010--Hb_013727_010 Hb_111332_010--Hb_105480_010 Hb_111332_010--Hb_005542_020 Hb_111332_010--Hb_013727_010 Hb_111332_010--Hb_006692_050 Hb_105480_010--Hb_005542_020 Hb_105480_010--Hb_013727_010 Hb_009268_110 Hb_009268_110 Hb_105480_010--Hb_009268_110 Hb_005542_020--Hb_013727_010 Hb_005542_020--Hb_009268_110 Hb_042026_010 Hb_042026_010 Hb_006692_050--Hb_042026_010 Hb_000795_010 Hb_000795_010 Hb_006692_050--Hb_000795_010 Hb_006692_050--Hb_105480_010 Hb_013727_010--Hb_009268_110 Hb_089491_010 Hb_089491_010 Hb_013727_010--Hb_089491_010 Hb_136856_010 Hb_136856_010 Hb_013727_010--Hb_136856_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.218101 1.53884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis