Hb_128287_010

Information

Type -
Description -
Location Contig128287: 949-2681
Sequence    

Annotation

kegg
ID vvi:104877935
description uncharacterized LOC104877935
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID A5BKJ7
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018924 PE=4 SV=1
Gene Ontology
ID GO:0003676
description MULTISPECIES: hypothetical protein, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128287_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_108404_010 0.0187614757 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_000204_180 0.0413522153 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
4 Hb_002673_050 0.0672083592 - - -
5 Hb_000227_110 0.0691382349 - - hypothetical protein CICLE_v10010500mg, partial [Citrus clementina]
6 Hb_091369_010 0.0692357442 - - -
7 Hb_008473_010 0.070217279 - - PREDICTED: laccase-14-like [Jatropha curcas]
8 Hb_002141_010 0.080846297 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
9 Hb_000944_010 0.0808749253 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
10 Hb_003400_030 0.0809729827 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
11 Hb_002400_450 0.0856885486 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
12 Hb_000260_190 0.0881245174 - - -
13 Hb_034667_010 0.0922723623 - - -
14 Hb_008151_030 0.09875396 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_010399_020 0.1026445552 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
16 Hb_079543_010 0.1092569483 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_000362_230 0.1243872757 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_013205_010 0.1348791238 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
19 Hb_155911_010 0.1364645984 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
20 Hb_001142_020 0.1422887702 - - -

Gene co-expression network

sample Hb_128287_010 Hb_128287_010 Hb_108404_010 Hb_108404_010 Hb_128287_010--Hb_108404_010 Hb_000204_180 Hb_000204_180 Hb_128287_010--Hb_000204_180 Hb_002673_050 Hb_002673_050 Hb_128287_010--Hb_002673_050 Hb_000227_110 Hb_000227_110 Hb_128287_010--Hb_000227_110 Hb_091369_010 Hb_091369_010 Hb_128287_010--Hb_091369_010 Hb_008473_010 Hb_008473_010 Hb_128287_010--Hb_008473_010 Hb_108404_010--Hb_002673_050 Hb_108404_010--Hb_091369_010 Hb_108404_010--Hb_008473_010 Hb_108404_010--Hb_000204_180 Hb_000944_010 Hb_000944_010 Hb_108404_010--Hb_000944_010 Hb_000204_180--Hb_000227_110 Hb_002141_010 Hb_002141_010 Hb_000204_180--Hb_002141_010 Hb_079543_010 Hb_079543_010 Hb_000204_180--Hb_079543_010 Hb_000362_230 Hb_000362_230 Hb_000204_180--Hb_000362_230 Hb_002673_050--Hb_091369_010 Hb_002673_050--Hb_008473_010 Hb_002673_050--Hb_000944_010 Hb_003400_030 Hb_003400_030 Hb_002673_050--Hb_003400_030 Hb_002400_450 Hb_002400_450 Hb_002673_050--Hb_002400_450 Hb_000260_190 Hb_000260_190 Hb_002673_050--Hb_000260_190 Hb_000227_110--Hb_002141_010 Hb_000227_110--Hb_079543_010 Hb_000227_110--Hb_000362_230 Hb_155911_010 Hb_155911_010 Hb_000227_110--Hb_155911_010 Hb_091369_010--Hb_008473_010 Hb_091369_010--Hb_000944_010 Hb_091369_010--Hb_003400_030 Hb_091369_010--Hb_002400_450 Hb_091369_010--Hb_000260_190 Hb_008473_010--Hb_000944_010 Hb_008473_010--Hb_003400_030 Hb_008473_010--Hb_002400_450 Hb_008473_010--Hb_000260_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.07501 0.0478534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis