Hb_128376_010

Information

Type -
Description -
Location Contig128376: 1-1800
Sequence    

Annotation

kegg
ID rcu:RCOM_1494410
description serine-threonine protein kinase, plant-type, putative (EC:2.7.10.2)
nr
ID XP_002516047.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q1PEM5
description Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2
trembl
ID B9RQM8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494410 PE=3 SV=1
Gene Ontology
ID GO:0000166
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08700: 596-968
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128376_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000152_670 0.1079018443 - - hypothetical protein VITISV_037603 [Vitis vinifera]
3 Hb_004017_040 0.1132568586 - - kinetochore protein nuf2, putative [Ricinus communis]
4 Hb_001052_040 0.1225599509 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
5 Hb_000261_290 0.1263552736 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
6 Hb_002742_080 0.1274365515 - - unknown [Populus trichocarpa]
7 Hb_010883_080 0.1324138022 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
8 Hb_006615_100 0.1325484532 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
9 Hb_001195_150 0.1339706749 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
10 Hb_035318_010 0.1345253029 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
11 Hb_002609_010 0.1371019903 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
12 Hb_000098_130 0.1379743666 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
13 Hb_000886_060 0.141267015 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
14 Hb_002805_170 0.1433397212 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
15 Hb_008246_030 0.1478781165 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
16 Hb_000997_410 0.148177395 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
17 Hb_003097_180 0.1490053718 - - PREDICTED: crossover junction endonuclease MUS81 [Jatropha curcas]
18 Hb_003710_040 0.1494897916 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
19 Hb_080147_080 0.1498047479 - - peroxiredoxin, putative [Ricinus communis]
20 Hb_004920_060 0.1498766503 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_128376_010 Hb_128376_010 Hb_000152_670 Hb_000152_670 Hb_128376_010--Hb_000152_670 Hb_004017_040 Hb_004017_040 Hb_128376_010--Hb_004017_040 Hb_001052_040 Hb_001052_040 Hb_128376_010--Hb_001052_040 Hb_000261_290 Hb_000261_290 Hb_128376_010--Hb_000261_290 Hb_002742_080 Hb_002742_080 Hb_128376_010--Hb_002742_080 Hb_010883_080 Hb_010883_080 Hb_128376_010--Hb_010883_080 Hb_000152_670--Hb_001052_040 Hb_000996_180 Hb_000996_180 Hb_000152_670--Hb_000996_180 Hb_000152_670--Hb_004017_040 Hb_015354_010 Hb_015354_010 Hb_000152_670--Hb_015354_010 Hb_009646_050 Hb_009646_050 Hb_000152_670--Hb_009646_050 Hb_004017_040--Hb_000261_290 Hb_000331_160 Hb_000331_160 Hb_004017_040--Hb_000331_160 Hb_000098_130 Hb_000098_130 Hb_004017_040--Hb_000098_130 Hb_000953_030 Hb_000953_030 Hb_004017_040--Hb_000953_030 Hb_000186_260 Hb_000186_260 Hb_004017_040--Hb_000186_260 Hb_001946_300 Hb_001946_300 Hb_004017_040--Hb_001946_300 Hb_001052_040--Hb_015354_010 Hb_000886_060 Hb_000886_060 Hb_001052_040--Hb_000886_060 Hb_001052_040--Hb_002742_080 Hb_001910_020 Hb_001910_020 Hb_001052_040--Hb_001910_020 Hb_173178_020 Hb_173178_020 Hb_001052_040--Hb_173178_020 Hb_000261_290--Hb_000098_130 Hb_004899_070 Hb_004899_070 Hb_000261_290--Hb_004899_070 Hb_000120_620 Hb_000120_620 Hb_000261_290--Hb_000120_620 Hb_000313_340 Hb_000313_340 Hb_000261_290--Hb_000313_340 Hb_003097_180 Hb_003097_180 Hb_000261_290--Hb_003097_180 Hb_006588_050 Hb_006588_050 Hb_000261_290--Hb_006588_050 Hb_005333_030 Hb_005333_030 Hb_002742_080--Hb_005333_030 Hb_003710_040 Hb_003710_040 Hb_002742_080--Hb_003710_040 Hb_002742_080--Hb_000261_290 Hb_002320_070 Hb_002320_070 Hb_002742_080--Hb_002320_070 Hb_000116_570 Hb_000116_570 Hb_010883_080--Hb_000116_570 Hb_001473_080 Hb_001473_080 Hb_010883_080--Hb_001473_080 Hb_000016_280 Hb_000016_280 Hb_010883_080--Hb_000016_280 Hb_000685_080 Hb_000685_080 Hb_010883_080--Hb_000685_080 Hb_001922_130 Hb_001922_130 Hb_010883_080--Hb_001922_130 Hb_010883_080--Hb_000186_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.0478 42.9783 18.8122 15.0259 40.0695 50.095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.54771 10.6203 2.90069 11.1958 3.21458

CAGE analysis