Hb_128392_010

Information

Type transcription factor
Description TF Family: B3
Location Contig128392: 1095-2524
Sequence    

Annotation

kegg
ID rcu:RCOM_0813720
description DNA binding protein, putative
nr
ID XP_012066890.1
description PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
swissprot
ID Q1G3M3
description B3 domain-containing protein At3g19184 OS=Arabidopsis thaliana GN=At3g19184 PE=2 SV=1
trembl
ID B9RYJ7
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0813720 PE=4 SV=1
Gene Ontology
ID GO:0003677
description b3 domain-containing protein at3g19184-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128392_010 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
2 Hb_021576_050 0.074694165 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
3 Hb_000527_020 0.0816665372 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
4 Hb_000035_230 0.0828912821 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
5 Hb_003847_060 0.0844109141 - - syntaxin, putative [Ricinus communis]
6 Hb_005398_050 0.0990219679 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]
7 Hb_003464_010 0.1026283791 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000069_650 0.1071676738 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001247_060 0.1100432421 - - zinc finger protein, putative [Ricinus communis]
10 Hb_001950_090 0.1102861877 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
11 Hb_012092_040 0.1157130961 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
12 Hb_012016_050 0.118466947 - - hypothetical protein JCGZ_09036 [Jatropha curcas]
13 Hb_001377_370 0.1193041241 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
14 Hb_000089_090 0.1193295141 - - hypothetical protein POPTR_0019s12670g [Populus trichocarpa]
15 Hb_000700_020 0.1194407979 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
16 Hb_001307_150 0.1222769522 - - receptor protein kinase, putative [Ricinus communis]
17 Hb_001390_040 0.122964572 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
18 Hb_000390_010 0.1236234276 - - PREDICTED: protein CDI [Jatropha curcas]
19 Hb_089140_070 0.1253120077 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
20 Hb_000890_140 0.1257698442 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]

Gene co-expression network

sample Hb_128392_010 Hb_128392_010 Hb_021576_050 Hb_021576_050 Hb_128392_010--Hb_021576_050 Hb_000527_020 Hb_000527_020 Hb_128392_010--Hb_000527_020 Hb_000035_230 Hb_000035_230 Hb_128392_010--Hb_000035_230 Hb_003847_060 Hb_003847_060 Hb_128392_010--Hb_003847_060 Hb_005398_050 Hb_005398_050 Hb_128392_010--Hb_005398_050 Hb_003464_010 Hb_003464_010 Hb_128392_010--Hb_003464_010 Hb_021576_050--Hb_000527_020 Hb_021576_050--Hb_003847_060 Hb_021576_050--Hb_000035_230 Hb_021576_050--Hb_005398_050 Hb_118282_020 Hb_118282_020 Hb_021576_050--Hb_118282_020 Hb_000890_140 Hb_000890_140 Hb_000527_020--Hb_000890_140 Hb_000527_020--Hb_005398_050 Hb_001390_040 Hb_001390_040 Hb_000527_020--Hb_001390_040 Hb_006573_310 Hb_006573_310 Hb_000527_020--Hb_006573_310 Hb_001247_060 Hb_001247_060 Hb_000035_230--Hb_001247_060 Hb_000089_090 Hb_000089_090 Hb_000035_230--Hb_000089_090 Hb_000035_230--Hb_003847_060 Hb_012092_040 Hb_012092_040 Hb_000035_230--Hb_012092_040 Hb_000035_230--Hb_005398_050 Hb_003847_060--Hb_005398_050 Hb_001307_150 Hb_001307_150 Hb_003847_060--Hb_001307_150 Hb_001950_090 Hb_001950_090 Hb_003847_060--Hb_001950_090 Hb_001699_270 Hb_001699_270 Hb_003847_060--Hb_001699_270 Hb_000856_390 Hb_000856_390 Hb_003847_060--Hb_000856_390 Hb_000480_060 Hb_000480_060 Hb_003847_060--Hb_000480_060 Hb_078448_010 Hb_078448_010 Hb_005398_050--Hb_078448_010 Hb_005398_050--Hb_001307_150 Hb_016898_020 Hb_016898_020 Hb_005398_050--Hb_016898_020 Hb_003464_010--Hb_012092_040 Hb_000445_260 Hb_000445_260 Hb_003464_010--Hb_000445_260 Hb_001329_050 Hb_001329_050 Hb_003464_010--Hb_001329_050 Hb_010080_050 Hb_010080_050 Hb_003464_010--Hb_010080_050 Hb_000390_010 Hb_000390_010 Hb_003464_010--Hb_000390_010 Hb_003464_010--Hb_000035_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.135224 0.224722 7.00959 6.32607 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.401367 0.146769

CAGE analysis