Hb_128486_010

Information

Type -
Description -
Location Contig128486: 8854-10580
Sequence    

Annotation

kegg
ID rcu:RCOM_1459290
description E3 ubiquitin ligase PUB14, putative
nr
ID XP_012086074.1
description PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
swissprot
ID Q9LSA6
description U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1
trembl
ID A0A067K1K5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22231 PE=4 SV=1
Gene Ontology
ID GO:0005488
description u-box domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128486_010 0.0 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
2 Hb_003633_100 0.1613538871 - - hypoia-responsive family protein 1 [Hevea brasiliensis]
3 Hb_031822_010 0.1806781424 - - PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo]
4 Hb_089140_110 0.1807647339 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
5 Hb_000072_190 0.1916570333 - - putative S-adenosylmethionine decarboxylase [Prunus dulcis]
6 Hb_000352_200 0.1985774232 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
7 Hb_000020_100 0.2024060556 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
8 Hb_006018_050 0.2069961126 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
9 Hb_011618_100 0.2194950573 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
10 Hb_002675_200 0.2198581623 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
11 Hb_000813_160 0.2261242031 - - hypothetical protein PRUPE_ppa013181mg [Prunus persica]
12 Hb_014508_010 0.2265467254 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
13 Hb_084849_010 0.2390322909 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001269_460 0.2398175985 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
15 Hb_004046_060 0.2399217902 - - PREDICTED: protein CDI [Jatropha curcas]
16 Hb_001322_030 0.240560702 - - triacylglycerol lipase, putative [Ricinus communis]
17 Hb_128524_020 0.2412921065 - - PREDICTED: aspartic proteinase-like protein 2 isoform X2 [Jatropha curcas]
18 Hb_089140_090 0.2441743109 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
19 Hb_000529_150 0.2453056421 - - protein with unknown function [Ricinus communis]
20 Hb_005701_110 0.2458713647 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_128486_010 Hb_128486_010 Hb_003633_100 Hb_003633_100 Hb_128486_010--Hb_003633_100 Hb_031822_010 Hb_031822_010 Hb_128486_010--Hb_031822_010 Hb_089140_110 Hb_089140_110 Hb_128486_010--Hb_089140_110 Hb_000072_190 Hb_000072_190 Hb_128486_010--Hb_000072_190 Hb_000352_200 Hb_000352_200 Hb_128486_010--Hb_000352_200 Hb_000020_100 Hb_000020_100 Hb_128486_010--Hb_000020_100 Hb_003633_100--Hb_089140_110 Hb_003633_100--Hb_031822_010 Hb_005701_110 Hb_005701_110 Hb_003633_100--Hb_005701_110 Hb_006018_050 Hb_006018_050 Hb_003633_100--Hb_006018_050 Hb_003633_100--Hb_000072_190 Hb_031822_010--Hb_000072_190 Hb_003147_070 Hb_003147_070 Hb_031822_010--Hb_003147_070 Hb_000046_310 Hb_000046_310 Hb_031822_010--Hb_000046_310 Hb_004994_250 Hb_004994_250 Hb_031822_010--Hb_004994_250 Hb_018790_050 Hb_018790_050 Hb_031822_010--Hb_018790_050 Hb_013358_020 Hb_013358_020 Hb_031822_010--Hb_013358_020 Hb_089140_110--Hb_000072_190 Hb_089140_110--Hb_031822_010 Hb_101146_010 Hb_101146_010 Hb_089140_110--Hb_101146_010 Hb_089140_110--Hb_005701_110 Hb_089140_110--Hb_006018_050 Hb_000072_190--Hb_013358_020 Hb_084849_010 Hb_084849_010 Hb_000072_190--Hb_084849_010 Hb_000749_070 Hb_000749_070 Hb_000072_190--Hb_000749_070 Hb_000072_190--Hb_006018_050 Hb_004631_200 Hb_004631_200 Hb_000072_190--Hb_004631_200 Hb_002309_050 Hb_002309_050 Hb_000352_200--Hb_002309_050 Hb_000189_540 Hb_000189_540 Hb_000352_200--Hb_000189_540 Hb_000152_210 Hb_000152_210 Hb_000352_200--Hb_000152_210 Hb_000155_090 Hb_000155_090 Hb_000352_200--Hb_000155_090 Hb_052764_070 Hb_052764_070 Hb_000352_200--Hb_052764_070 Hb_004787_040 Hb_004787_040 Hb_000352_200--Hb_004787_040 Hb_031022_020 Hb_031022_020 Hb_000020_100--Hb_031022_020 Hb_000637_020 Hb_000637_020 Hb_000020_100--Hb_000637_020 Hb_000020_100--Hb_084849_010 Hb_002026_050 Hb_002026_050 Hb_000020_100--Hb_002026_050 Hb_002078_290 Hb_002078_290 Hb_000020_100--Hb_002078_290 Hb_118939_010 Hb_118939_010 Hb_000020_100--Hb_118939_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.320862 8.96766 15.3666 13.3893 0 0.0452828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.06004 10.7906 4.39495 0.747323 1.59571

CAGE analysis