Hb_128548_020

Information

Type -
Description -
Location Contig128548: 14625-23884
Sequence    

Annotation

kegg
ID tcc:TCM_001939
description TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein isoform 1
nr
ID XP_012080928.1
description PREDICTED: transmembrane protein 56-like [Jatropha curcas]
swissprot
ID Q6PGS5
description Transmembrane protein 56-B OS=Xenopus laevis GN=tmem56-b PE=2 SV=1
trembl
ID A0A067K312
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16957 PE=4 SV=1
Gene Ontology
ID GO:0016020
description transmembrane protein 56-b-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08721: 17376-17555 , PASA_asmbl_08722: 17556-18165
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128548_020 0.0 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
2 Hb_005288_160 0.0764647092 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
3 Hb_023226_060 0.0911092283 - - unnamed protein product [Vitis vinifera]
4 Hb_001623_580 0.1001626309 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
5 Hb_000733_060 0.103674447 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
6 Hb_002276_190 0.1060781952 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
7 Hb_001341_040 0.1085992643 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
8 Hb_007447_010 0.1096282533 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
9 Hb_004032_050 0.1160792845 - - hypothetical protein CISIN_1g014592mg [Citrus sinensis]
10 Hb_000175_490 0.1181310557 - - PREDICTED: probable polygalacturonase At1g80170 isoform X1 [Jatropha curcas]
11 Hb_000768_030 0.1206438494 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
12 Hb_000997_020 0.120787356 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
13 Hb_002007_250 0.1210222238 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003605_070 0.1215301693 - - PREDICTED: angio-associated migratory cell protein [Jatropha curcas]
15 Hb_004096_170 0.1222615881 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
16 Hb_010810_050 0.1224422727 - - hypothetical protein [Cleome spinosa]
17 Hb_005928_060 0.1226561687 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
18 Hb_001040_170 0.1230272131 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_003453_020 0.1239477613 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
20 Hb_011344_010 0.125300991 - - PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Jatropha curcas]

Gene co-expression network

sample Hb_128548_020 Hb_128548_020 Hb_005288_160 Hb_005288_160 Hb_128548_020--Hb_005288_160 Hb_023226_060 Hb_023226_060 Hb_128548_020--Hb_023226_060 Hb_001623_580 Hb_001623_580 Hb_128548_020--Hb_001623_580 Hb_000733_060 Hb_000733_060 Hb_128548_020--Hb_000733_060 Hb_002276_190 Hb_002276_190 Hb_128548_020--Hb_002276_190 Hb_001341_040 Hb_001341_040 Hb_128548_020--Hb_001341_040 Hb_005288_160--Hb_000733_060 Hb_003605_070 Hb_003605_070 Hb_005288_160--Hb_003605_070 Hb_005288_160--Hb_023226_060 Hb_002631_050 Hb_002631_050 Hb_005288_160--Hb_002631_050 Hb_003453_020 Hb_003453_020 Hb_005288_160--Hb_003453_020 Hb_023226_060--Hb_000733_060 Hb_000175_490 Hb_000175_490 Hb_023226_060--Hb_000175_490 Hb_000768_030 Hb_000768_030 Hb_023226_060--Hb_000768_030 Hb_022256_040 Hb_022256_040 Hb_023226_060--Hb_022256_040 Hb_011644_020 Hb_011644_020 Hb_023226_060--Hb_011644_020 Hb_001623_580--Hb_003605_070 Hb_004032_050 Hb_004032_050 Hb_001623_580--Hb_004032_050 Hb_001623_580--Hb_002276_190 Hb_001623_580--Hb_005288_160 Hb_000209_090 Hb_000209_090 Hb_001623_580--Hb_000209_090 Hb_000284_200 Hb_000284_200 Hb_001623_580--Hb_000284_200 Hb_000733_060--Hb_002631_050 Hb_000733_060--Hb_022256_040 Hb_000733_060--Hb_000768_030 Hb_001001_160 Hb_001001_160 Hb_000733_060--Hb_001001_160 Hb_002276_190--Hb_004032_050 Hb_002276_190--Hb_003605_070 Hb_002276_190--Hb_000175_490 Hb_002276_190--Hb_005288_160 Hb_002276_190--Hb_000768_030 Hb_011344_010 Hb_011344_010 Hb_001341_040--Hb_011344_010 Hb_001341_040--Hb_000733_060 Hb_001341_040--Hb_000768_030 Hb_000161_030 Hb_000161_030 Hb_001341_040--Hb_000161_030 Hb_006029_010 Hb_006029_010 Hb_001341_040--Hb_006029_010 Hb_002997_100 Hb_002997_100 Hb_001341_040--Hb_002997_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.55062 1.18169 1.3061 1.62967 18.6731 10.7973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.69456 6.71131 5.16863 3.51999 2.05806

CAGE analysis