Hb_128750_010

Information

Type -
Description -
Location Contig128750: 1159-2498
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12440g
description POPTRDRAFT_578835; hypothetical protein
nr
ID XP_011020363.1
description PREDICTED: receptor-like protein 12 [Populus euphratica]
swissprot
ID Q9LRT1
description Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1
trembl
ID B9IMM6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s12440g PE=4 SV=2
Gene Ontology
ID GO:0003824
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128750_010 0.0 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
2 Hb_002740_060 0.112382412 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
3 Hb_029386_010 0.1224300046 - - RALF-LIKE 27 family protein [Populus trichocarpa]
4 Hb_004896_030 0.1234466421 - - hypothetical protein VITISV_007475 [Vitis vinifera]
5 Hb_000445_160 0.1249663702 - - PREDICTED: probable calcium-binding protein CML44 [Jatropha curcas]
6 Hb_000223_090 0.1266253014 - - Blue copper protein precursor, putative [Ricinus communis]
7 Hb_005622_040 0.1275962666 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
8 Hb_008253_050 0.1355116052 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
9 Hb_005348_050 0.136488995 - - beta-galactosidase, putative [Ricinus communis]
10 Hb_000627_110 0.1387325471 - - cellulose synthase, putative [Ricinus communis]
11 Hb_097783_030 0.1420584826 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
12 Hb_025161_030 0.1425558529 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
13 Hb_000907_130 0.1442239109 - - -
14 Hb_005155_030 0.1447322555 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
15 Hb_001384_040 0.1463161289 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
16 Hb_113379_010 0.151209341 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
17 Hb_011618_010 0.1545036948 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
18 Hb_000199_090 0.1548418541 - - Tetrapyrrole-binding family protein [Populus trichocarpa]
19 Hb_002835_050 0.1554175615 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
20 Hb_000265_030 0.1573956 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]

Gene co-expression network

sample Hb_128750_010 Hb_128750_010 Hb_002740_060 Hb_002740_060 Hb_128750_010--Hb_002740_060 Hb_029386_010 Hb_029386_010 Hb_128750_010--Hb_029386_010 Hb_004896_030 Hb_004896_030 Hb_128750_010--Hb_004896_030 Hb_000445_160 Hb_000445_160 Hb_128750_010--Hb_000445_160 Hb_000223_090 Hb_000223_090 Hb_128750_010--Hb_000223_090 Hb_005622_040 Hb_005622_040 Hb_128750_010--Hb_005622_040 Hb_002740_060--Hb_004896_030 Hb_000265_030 Hb_000265_030 Hb_002740_060--Hb_000265_030 Hb_002740_060--Hb_005622_040 Hb_113379_010 Hb_113379_010 Hb_002740_060--Hb_113379_010 Hb_001384_040 Hb_001384_040 Hb_002740_060--Hb_001384_040 Hb_000627_110 Hb_000627_110 Hb_002740_060--Hb_000627_110 Hb_003358_030 Hb_003358_030 Hb_029386_010--Hb_003358_030 Hb_005539_150 Hb_005539_150 Hb_029386_010--Hb_005539_150 Hb_000477_090 Hb_000477_090 Hb_029386_010--Hb_000477_090 Hb_029386_010--Hb_000627_110 Hb_029386_010--Hb_000223_090 Hb_029386_010--Hb_004896_030 Hb_004896_030--Hb_000627_110 Hb_000199_090 Hb_000199_090 Hb_004896_030--Hb_000199_090 Hb_014510_030 Hb_014510_030 Hb_004896_030--Hb_014510_030 Hb_114893_010 Hb_114893_010 Hb_004896_030--Hb_114893_010 Hb_000445_160--Hb_113379_010 Hb_000445_160--Hb_001384_040 Hb_000445_160--Hb_114893_010 Hb_006142_050 Hb_006142_050 Hb_000445_160--Hb_006142_050 Hb_006053_020 Hb_006053_020 Hb_000445_160--Hb_006053_020 Hb_005348_050 Hb_005348_050 Hb_000223_090--Hb_005348_050 Hb_001894_100 Hb_001894_100 Hb_000223_090--Hb_001894_100 Hb_001790_060 Hb_001790_060 Hb_000223_090--Hb_001790_060 Hb_008253_050 Hb_008253_050 Hb_000223_090--Hb_008253_050 Hb_133076_010 Hb_133076_010 Hb_000223_090--Hb_133076_010 Hb_001104_220 Hb_001104_220 Hb_005622_040--Hb_001104_220 Hb_005622_040--Hb_000265_030 Hb_005622_040--Hb_008253_050 Hb_097783_030 Hb_097783_030 Hb_005622_040--Hb_097783_030 Hb_011501_020 Hb_011501_020 Hb_005622_040--Hb_011501_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.153181 0.244038 0 0.0250659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.10369 0.722399

CAGE analysis