Hb_128851_020

Information

Type -
Description -
Location Contig128851: 6015-9197
Sequence    

Annotation

kegg
ID rcu:RCOM_0909020
description ankyrin repeat-containing protein, putative
nr
ID XP_002517018.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q6AWW5
description Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1
trembl
ID B9RTE9
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0909020 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat-containing protein at5g02620-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08768: 5993-6459 , PASA_asmbl_08770: 7500-8680 , PASA_asmbl_08771: 8856-9143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128851_020 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_001511_200 0.0345246902 - - Embryonic abundant protein, putative [Ricinus communis]
3 Hb_001677_140 0.0401126485 - - PREDICTED: uncharacterized protein LOC102622520 isoform X1 [Citrus sinensis]
4 Hb_099188_010 0.0454941583 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
5 Hb_110356_010 0.0620981682 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
6 Hb_002548_030 0.0691415079 - - PREDICTED: uncharacterized protein LOC103343650 [Prunus mume]
7 Hb_000359_230 0.0715204897 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
8 Hb_034581_010 0.0779363414 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
9 Hb_010136_020 0.0785501418 - - stress-induced receptor-like kinase [Medicago truncatula]
10 Hb_002006_110 0.0810556646 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
11 Hb_008637_020 0.0879901586 - - conserved hypothetical protein [Ricinus communis]
12 Hb_036754_040 0.0894367446 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
13 Hb_007546_010 0.0987680219 - - unnamed protein product [Vitis vinifera]
14 Hb_003207_230 0.1078828527 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
15 Hb_184752_010 0.1079343278 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
16 Hb_010477_020 0.1101430269 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
17 Hb_002066_050 0.1115418756 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
18 Hb_002289_180 0.1121825265 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Nelumbo nucifera]
19 Hb_002542_030 0.1133620594 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
20 Hb_004724_310 0.1161303068 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]

Gene co-expression network

sample Hb_128851_020 Hb_128851_020 Hb_001511_200 Hb_001511_200 Hb_128851_020--Hb_001511_200 Hb_001677_140 Hb_001677_140 Hb_128851_020--Hb_001677_140 Hb_099188_010 Hb_099188_010 Hb_128851_020--Hb_099188_010 Hb_110356_010 Hb_110356_010 Hb_128851_020--Hb_110356_010 Hb_002548_030 Hb_002548_030 Hb_128851_020--Hb_002548_030 Hb_000359_230 Hb_000359_230 Hb_128851_020--Hb_000359_230 Hb_001511_200--Hb_001677_140 Hb_010136_020 Hb_010136_020 Hb_001511_200--Hb_010136_020 Hb_002006_110 Hb_002006_110 Hb_001511_200--Hb_002006_110 Hb_001511_200--Hb_099188_010 Hb_000668_220 Hb_000668_220 Hb_001511_200--Hb_000668_220 Hb_001677_140--Hb_010136_020 Hb_001677_140--Hb_110356_010 Hb_001677_140--Hb_002006_110 Hb_036754_040 Hb_036754_040 Hb_001677_140--Hb_036754_040 Hb_034581_010 Hb_034581_010 Hb_001677_140--Hb_034581_010 Hb_099188_010--Hb_002548_030 Hb_099188_010--Hb_000359_230 Hb_099188_010--Hb_110356_010 Hb_099188_010--Hb_001677_140 Hb_099188_010--Hb_034581_010 Hb_110356_010--Hb_002548_030 Hb_110356_010--Hb_000359_230 Hb_110356_010--Hb_034581_010 Hb_002548_030--Hb_000359_230 Hb_002548_030--Hb_034581_010 Hb_002548_030--Hb_001677_140 Hb_000359_230--Hb_034581_010 Hb_000359_230--Hb_001677_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.981754 0.588864 0.387097 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis