Hb_128894_010

Information

Type -
Description -
Location Contig128894: 29-772
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9FE20
description Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0005737
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128894_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_106595_010 0.0153110486 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
3 Hb_034558_010 0.015802307 - - -
4 Hb_044724_020 0.0271482519 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Fragaria vesca subsp. vesca]
5 Hb_000215_380 0.0382189565 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
6 Hb_007328_020 0.0395714382 - - -
7 Hb_000563_370 0.0403618217 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
8 Hb_007264_050 0.0461752809 - - -
9 Hb_001766_090 0.046520349 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
10 Hb_007658_030 0.0545029573 - - PREDICTED: lupeol synthase-like isoform X1 [Populus euphratica]
11 Hb_000484_050 0.0617862655 - - hypothetical protein CICLE_v10028549mg [Citrus clementina]
12 Hb_030593_010 0.0636804016 - - hypothetical protein JCGZ_06063 [Jatropha curcas]
13 Hb_030312_060 0.0655254555 - - PREDICTED: uncharacterized protein LOC105634226 [Jatropha curcas]
14 Hb_064583_010 0.0670827352 - - PREDICTED: germin-like protein subfamily 1 member 7 [Vitis vinifera]
15 Hb_011909_130 0.0796088344 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
16 Hb_099085_010 0.0818604022 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
17 Hb_023827_010 0.0820946687 - - Cucumber peeling cupredoxin, putative [Ricinus communis]
18 Hb_009740_010 0.0894346016 - - receptor-kinase, putative [Ricinus communis]
19 Hb_000016_290 0.0973615877 - - multidrug resistance pump, putative [Ricinus communis]
20 Hb_011639_130 0.1155628101 - - mads box protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_128894_010 Hb_128894_010 Hb_106595_010 Hb_106595_010 Hb_128894_010--Hb_106595_010 Hb_034558_010 Hb_034558_010 Hb_128894_010--Hb_034558_010 Hb_044724_020 Hb_044724_020 Hb_128894_010--Hb_044724_020 Hb_000215_380 Hb_000215_380 Hb_128894_010--Hb_000215_380 Hb_007328_020 Hb_007328_020 Hb_128894_010--Hb_007328_020 Hb_000563_370 Hb_000563_370 Hb_128894_010--Hb_000563_370 Hb_106595_010--Hb_044724_020 Hb_106595_010--Hb_000215_380 Hb_106595_010--Hb_007328_020 Hb_106595_010--Hb_000563_370 Hb_106595_010--Hb_034558_010 Hb_007658_030 Hb_007658_030 Hb_034558_010--Hb_007658_030 Hb_001766_090 Hb_001766_090 Hb_034558_010--Hb_001766_090 Hb_034558_010--Hb_044724_020 Hb_000484_050 Hb_000484_050 Hb_034558_010--Hb_000484_050 Hb_044724_020--Hb_000215_380 Hb_044724_020--Hb_007328_020 Hb_044724_020--Hb_000563_370 Hb_007264_050 Hb_007264_050 Hb_044724_020--Hb_007264_050 Hb_000215_380--Hb_007328_020 Hb_000215_380--Hb_000563_370 Hb_000215_380--Hb_007264_050 Hb_064583_010 Hb_064583_010 Hb_000215_380--Hb_064583_010 Hb_007328_020--Hb_000563_370 Hb_007328_020--Hb_064583_010 Hb_007328_020--Hb_007264_050 Hb_000563_370--Hb_064583_010 Hb_000563_370--Hb_007264_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.931462 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0439853 0

CAGE analysis