Hb_128986_010

Information

Type -
Description -
Location Contig128986: 10380-13159
Sequence    

Annotation

kegg
ID rcu:RCOM_1652480
description hypothetical protein
nr
ID XP_002516629.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P42730
description Chaperone protein ClpB1 OS=Arabidopsis thaliana GN=CLPB1 PE=1 SV=2
trembl
ID B9RSB0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1652480 PE=4 SV=1
Gene Ontology
ID GO:0019538
description double clp-n motif-containing p-loop nucleoside triphosphate hydrolases superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08786: 10617-10844 , PASA_asmbl_08787: 10867-11021 , PASA_asmbl_08788: 11265-11379 , PASA_asmbl_08789: 11702-12117 , PASA_asmbl_08790: 12607-12761
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128986_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002062_010 0.0479959498 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
3 Hb_003417_050 0.0484070101 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_143629_170 0.0537630729 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
5 Hb_001278_120 0.0631965051 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
6 Hb_005656_120 0.064056709 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
7 Hb_007483_090 0.0648361308 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002119_100 0.0674598398 - - cytochrome B561, putative [Ricinus communis]
9 Hb_006242_050 0.0685890781 - - Osmotin precursor, putative [Ricinus communis]
10 Hb_000017_180 0.0699206733 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
11 Hb_002740_050 0.0720275873 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
12 Hb_004459_010 0.0750916118 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
13 Hb_015561_010 0.0751653673 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004943_020 0.0764789924 - - cationic amino acid transporter, putative [Ricinus communis]
15 Hb_007163_110 0.0786857848 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
16 Hb_003855_060 0.0802782637 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
17 Hb_004650_110 0.0828515635 - - hypothetical protein POPTR_0002s08760g [Populus trichocarpa]
18 Hb_009023_010 0.0889861256 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
19 Hb_002809_180 0.0890537703 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
20 Hb_000103_200 0.0914810844 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_128986_010 Hb_128986_010 Hb_002062_010 Hb_002062_010 Hb_128986_010--Hb_002062_010 Hb_003417_050 Hb_003417_050 Hb_128986_010--Hb_003417_050 Hb_143629_170 Hb_143629_170 Hb_128986_010--Hb_143629_170 Hb_001278_120 Hb_001278_120 Hb_128986_010--Hb_001278_120 Hb_005656_120 Hb_005656_120 Hb_128986_010--Hb_005656_120 Hb_007483_090 Hb_007483_090 Hb_128986_010--Hb_007483_090 Hb_015561_010 Hb_015561_010 Hb_002062_010--Hb_015561_010 Hb_000017_180 Hb_000017_180 Hb_002062_010--Hb_000017_180 Hb_002062_010--Hb_005656_120 Hb_002062_010--Hb_003417_050 Hb_002119_100 Hb_002119_100 Hb_002062_010--Hb_002119_100 Hb_003417_050--Hb_007483_090 Hb_003417_050--Hb_002119_100 Hb_003417_050--Hb_005656_120 Hb_003417_050--Hb_143629_170 Hb_002740_050 Hb_002740_050 Hb_143629_170--Hb_002740_050 Hb_004943_020 Hb_004943_020 Hb_143629_170--Hb_004943_020 Hb_006242_050 Hb_006242_050 Hb_143629_170--Hb_006242_050 Hb_003855_060 Hb_003855_060 Hb_143629_170--Hb_003855_060 Hb_000343_070 Hb_000343_070 Hb_001278_120--Hb_000343_070 Hb_001278_120--Hb_004943_020 Hb_004459_010 Hb_004459_010 Hb_001278_120--Hb_004459_010 Hb_001278_120--Hb_003855_060 Hb_000326_120 Hb_000326_120 Hb_001278_120--Hb_000326_120 Hb_005656_120--Hb_000017_180 Hb_005656_120--Hb_015561_010 Hb_007163_110 Hb_007163_110 Hb_005656_120--Hb_007163_110 Hb_007483_090--Hb_002119_100 Hb_000329_780 Hb_000329_780 Hb_007483_090--Hb_000329_780 Hb_007483_090--Hb_002062_010 Hb_007483_090--Hb_015561_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.12032 1.17295 2.84425 0.0070426 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0586788 2.20071

CAGE analysis