Hb_129046_010

Information

Type -
Description -
Location Contig129046: 41-580
Sequence    

Annotation

kegg
ID vvi:104878870
description uncharacterized LOC104878870
nr
ID XP_010942698.1
description PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
swissprot
ID Q9LNG5
description Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1
trembl
ID A5BJW1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008825 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_129046_010 0.0 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
2 Hb_003183_010 0.1482837179 - - PREDICTED: uncharacterized protein LOC105785048, partial [Gossypium raimondii]
3 Hb_131320_010 0.1646592678 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
4 Hb_000975_260 0.1840890445 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000169_100 0.1918887636 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
6 Hb_000675_040 0.2055704594 - - hypothetical protein OsI_02937 [Oryza sativa Indica Group]
7 Hb_002631_270 0.2081101794 transcription factor TF Family: MYB hypothetical protein POPTR_0005s09930g [Populus trichocarpa]
8 Hb_029727_010 0.2109411183 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_155423_010 0.2155950764 - - -
10 Hb_008834_010 0.2209537182 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
11 Hb_017225_030 0.2248350347 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
12 Hb_000260_730 0.2251372597 - - -
13 Hb_008144_010 0.2264277676 - - hypothetical protein VITISV_015004 [Vitis vinifera]
14 Hb_072173_010 0.2323939576 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
15 Hb_006807_010 0.233413498 - - hypothetical protein JCGZ_20881 [Jatropha curcas]
16 Hb_001355_060 0.2336717458 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
17 Hb_145211_010 0.2339098689 - - hypothetical protein M569_05648, partial [Genlisea aurea]
18 Hb_030885_010 0.2352402376 - - -
19 Hb_002447_100 0.2358443336 - - hypothetical protein POPTR_0009s06260g [Populus trichocarpa]
20 Hb_002122_050 0.2393107319 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]

Gene co-expression network

sample Hb_129046_010 Hb_129046_010 Hb_003183_010 Hb_003183_010 Hb_129046_010--Hb_003183_010 Hb_131320_010 Hb_131320_010 Hb_129046_010--Hb_131320_010 Hb_000975_260 Hb_000975_260 Hb_129046_010--Hb_000975_260 Hb_000169_100 Hb_000169_100 Hb_129046_010--Hb_000169_100 Hb_000675_040 Hb_000675_040 Hb_129046_010--Hb_000675_040 Hb_002631_270 Hb_002631_270 Hb_129046_010--Hb_002631_270 Hb_001221_350 Hb_001221_350 Hb_003183_010--Hb_001221_350 Hb_028872_020 Hb_028872_020 Hb_003183_010--Hb_028872_020 Hb_003183_010--Hb_002631_270 Hb_002447_100 Hb_002447_100 Hb_003183_010--Hb_002447_100 Hb_155423_010 Hb_155423_010 Hb_003183_010--Hb_155423_010 Hb_131320_010--Hb_000675_040 Hb_072173_010 Hb_072173_010 Hb_131320_010--Hb_072173_010 Hb_000600_080 Hb_000600_080 Hb_131320_010--Hb_000600_080 Hb_145211_010 Hb_145211_010 Hb_131320_010--Hb_145211_010 Hb_008144_010 Hb_008144_010 Hb_131320_010--Hb_008144_010 Hb_070905_010 Hb_070905_010 Hb_000975_260--Hb_070905_010 Hb_001355_060 Hb_001355_060 Hb_000975_260--Hb_001355_060 Hb_003413_010 Hb_003413_010 Hb_000975_260--Hb_003413_010 Hb_000228_230 Hb_000228_230 Hb_000975_260--Hb_000228_230 Hb_000061_110 Hb_000061_110 Hb_000975_260--Hb_000061_110 Hb_003649_030 Hb_003649_030 Hb_000975_260--Hb_003649_030 Hb_029727_010 Hb_029727_010 Hb_000169_100--Hb_029727_010 Hb_017225_030 Hb_017225_030 Hb_000169_100--Hb_017225_030 Hb_006807_010 Hb_006807_010 Hb_000169_100--Hb_006807_010 Hb_000169_100--Hb_002631_270 Hb_151870_010 Hb_151870_010 Hb_000169_100--Hb_151870_010 Hb_007676_060 Hb_007676_060 Hb_000169_100--Hb_007676_060 Hb_000675_040--Hb_145211_010 Hb_059780_010 Hb_059780_010 Hb_000675_040--Hb_059780_010 Hb_121441_010 Hb_121441_010 Hb_000675_040--Hb_121441_010 Hb_002122_050 Hb_002122_050 Hb_000675_040--Hb_002122_050 Hb_000675_040--Hb_007676_060 Hb_002631_270--Hb_151870_010 Hb_002631_270--Hb_155423_010 Hb_002631_270--Hb_017225_030 Hb_009851_090 Hb_009851_090 Hb_002631_270--Hb_009851_090 Hb_002631_270--Hb_006807_010 Hb_002631_270--Hb_029727_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0951703 0.204735 0 0.201794 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.695511 1.22124

CAGE analysis