Hb_129204_010

Information

Type -
Description -
Location Contig129204: 7698-9234
Sequence    

Annotation

kegg
ID mus:103990022
description 40S ribosomal protein S30
nr
ID NP_001150550.1
description LOC100284182 [Zea mays]
swissprot
ID P49689
description 40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=3 SV=3
trembl
ID K3Y0Q8
description Uncharacterized protein OS=Setaria italica GN=Si007769m.g PE=4 SV=1
Gene Ontology
ID GO:0005739
description 40s ribosomal protein s30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08805: 7714-8775
cDNA
(Sanger)
(ID:Location)		 025_C21.ab1: 7714-8718 , 047_C16.ab1: 7714-8775

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_129204_010 0.0 - - LOC100284182 [Zea mays]
2 Hb_000345_430 0.1338007111 - - 40S ribosomal protein S24A [Hevea brasiliensis]
3 Hb_001575_030 0.155573197 - - hypothetical protein POPTR_0022s00880g [Populus trichocarpa]
4 Hb_015978_070 0.1594899905 - - -
5 Hb_006541_020 0.1706906465 - - unknown [Lotus japonicus]
6 Hb_001587_060 0.1953561905 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001610_130 0.1978292711 - - 40S ribosomal protein S30 [Medicago truncatula]
8 Hb_007520_060 0.1988551987 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
9 Hb_005054_040 0.1998439476 - - PREDICTED: 60S ribosomal protein L35a-1 [Gossypium raimondii]
10 Hb_010812_150 0.2000292763 - - hypothetical protein CICLE_v10009763mg [Citrus clementina]
11 Hb_008748_020 0.2034393969 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
12 Hb_000613_170 0.2048697093 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
13 Hb_012305_120 0.20634885 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
14 Hb_000879_210 0.2085102658 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
15 Hb_030565_040 0.2121694437 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
16 Hb_009659_020 0.2133981817 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
17 Hb_000367_030 0.2135820288 - - hypothetical protein POPTR_0015s06690g [Populus trichocarpa]
18 Hb_000025_240 0.2136451115 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
19 Hb_004429_110 0.2142389718 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
20 Hb_000181_380 0.2166685661 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]

Gene co-expression network

sample Hb_129204_010 Hb_129204_010 Hb_000345_430 Hb_000345_430 Hb_129204_010--Hb_000345_430 Hb_001575_030 Hb_001575_030 Hb_129204_010--Hb_001575_030 Hb_015978_070 Hb_015978_070 Hb_129204_010--Hb_015978_070 Hb_006541_020 Hb_006541_020 Hb_129204_010--Hb_006541_020 Hb_001587_060 Hb_001587_060 Hb_129204_010--Hb_001587_060 Hb_001610_130 Hb_001610_130 Hb_129204_010--Hb_001610_130 Hb_009659_020 Hb_009659_020 Hb_000345_430--Hb_009659_020 Hb_000345_430--Hb_015978_070 Hb_012305_120 Hb_012305_120 Hb_000345_430--Hb_012305_120 Hb_007520_060 Hb_007520_060 Hb_000345_430--Hb_007520_060 Hb_000345_430--Hb_001587_060 Hb_001575_030--Hb_001610_130 Hb_003226_220 Hb_003226_220 Hb_001575_030--Hb_003226_220 Hb_001575_030--Hb_015978_070 Hb_001571_090 Hb_001571_090 Hb_001575_030--Hb_001571_090 Hb_002232_470 Hb_002232_470 Hb_001575_030--Hb_002232_470 Hb_000419_130 Hb_000419_130 Hb_001575_030--Hb_000419_130 Hb_000367_170 Hb_000367_170 Hb_015978_070--Hb_000367_170 Hb_015978_070--Hb_001610_130 Hb_015978_070--Hb_012305_120 Hb_015978_070--Hb_000419_130 Hb_000025_240 Hb_000025_240 Hb_006541_020--Hb_000025_240 Hb_008748_020 Hb_008748_020 Hb_006541_020--Hb_008748_020 Hb_006718_010 Hb_006718_010 Hb_006541_020--Hb_006718_010 Hb_006541_020--Hb_007520_060 Hb_000367_210 Hb_000367_210 Hb_006541_020--Hb_000367_210 Hb_000367_030 Hb_000367_030 Hb_006541_020--Hb_000367_030 Hb_000009_040 Hb_000009_040 Hb_001587_060--Hb_000009_040 Hb_001587_060--Hb_009659_020 Hb_000236_460 Hb_000236_460 Hb_001587_060--Hb_000236_460 Hb_030565_040 Hb_030565_040 Hb_001587_060--Hb_030565_040 Hb_001587_060--Hb_007520_060 Hb_001610_130--Hb_000419_130 Hb_003058_220 Hb_003058_220 Hb_001610_130--Hb_003058_220 Hb_005224_050 Hb_005224_050 Hb_001610_130--Hb_005224_050 Hb_001610_130--Hb_003226_220 Hb_014834_140 Hb_014834_140 Hb_001610_130--Hb_014834_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.4199 18.0682 32.696 753.65 82.065 1561.87
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2005.94 4976.8 377.056 597.61 70.1294

CAGE analysis