Hb_129420_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig129420: 143-1276
Sequence    

Annotation

kegg
ID tcc:TCM_024689
description NAC domain, IPR003441-like protein
nr
ID AGL39715.1
description NAC transcription factor 059 [Jatropha curcas]
swissprot
ID O49255
description NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1
trembl
ID R4NHS0
description NAC transcription factor 059 OS=Jatropha curcas GN=JCGZ_18752 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac transcription factor 29-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_129420_010 0.0 transcription factor TF Family: NAC NAC transcription factor 059 [Jatropha curcas]
2 Hb_006483_120 0.1713261542 - - DNA binding protein, putative [Ricinus communis]
3 Hb_169948_010 0.1778809338 - - hypothetical protein VITISV_006524 [Vitis vinifera]
4 Hb_114271_010 0.1929397857 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
5 Hb_010620_030 0.1946393733 - - beta-amyrin synthase [Euphorbia tirucalli]
6 Hb_000552_010 0.1969986632 - - PREDICTED: fasciclin-like arabinogalactan protein 2 [Jatropha curcas]
7 Hb_042463_010 0.1971178616 - - cytochrome c oxidase subunit 2-1 (mitochondrion) (mitochondrion) [Brassica juncea var. tumida]
8 Hb_003714_030 0.1996029793 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
9 Hb_094437_020 0.2011190722 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
10 Hb_046117_030 0.2017880433 - - sialyltransferase, putative [Ricinus communis]
11 Hb_002798_080 0.2024547005 - - hypothetical protein VITISV_043745 [Vitis vinifera]
12 Hb_001221_350 0.2075117831 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008461_070 0.2091100872 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
14 Hb_000439_020 0.2104008402 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3-like [Jatropha curcas]
15 Hb_002631_270 0.2112009971 transcription factor TF Family: MYB hypothetical protein POPTR_0005s09930g [Populus trichocarpa]
16 Hb_016734_040 0.2133830152 - - abhydrolase domain containing, putative [Ricinus communis]
17 Hb_089124_010 0.213535764 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
18 Hb_006787_070 0.2137511737 - - PREDICTED: uncharacterized protein LOC104121706, partial [Nicotiana tomentosiformis]
19 Hb_000207_240 0.2150384025 - - hypothetical protein RCOM_0686540 [Ricinus communis]
20 Hb_000920_100 0.2160256016 - - o-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_129420_010 Hb_129420_010 Hb_006483_120 Hb_006483_120 Hb_129420_010--Hb_006483_120 Hb_169948_010 Hb_169948_010 Hb_129420_010--Hb_169948_010 Hb_114271_010 Hb_114271_010 Hb_129420_010--Hb_114271_010 Hb_010620_030 Hb_010620_030 Hb_129420_010--Hb_010620_030 Hb_000552_010 Hb_000552_010 Hb_129420_010--Hb_000552_010 Hb_042463_010 Hb_042463_010 Hb_129420_010--Hb_042463_010 Hb_182651_020 Hb_182651_020 Hb_006483_120--Hb_182651_020 Hb_006483_120--Hb_010620_030 Hb_000439_020 Hb_000439_020 Hb_006483_120--Hb_000439_020 Hb_006483_120--Hb_042463_010 Hb_000574_330 Hb_000574_330 Hb_006483_120--Hb_000574_330 Hb_007793_030 Hb_007793_030 Hb_006483_120--Hb_007793_030 Hb_066293_010 Hb_066293_010 Hb_169948_010--Hb_066293_010 Hb_125961_010 Hb_125961_010 Hb_169948_010--Hb_125961_010 Hb_004934_130 Hb_004934_130 Hb_169948_010--Hb_004934_130 Hb_057880_020 Hb_057880_020 Hb_169948_010--Hb_057880_020 Hb_000462_160 Hb_000462_160 Hb_169948_010--Hb_000462_160 Hb_027337_130 Hb_027337_130 Hb_169948_010--Hb_027337_130 Hb_032260_110 Hb_032260_110 Hb_114271_010--Hb_032260_110 Hb_032733_020 Hb_032733_020 Hb_114271_010--Hb_032733_020 Hb_004108_190 Hb_004108_190 Hb_114271_010--Hb_004108_190 Hb_013420_060 Hb_013420_060 Hb_114271_010--Hb_013420_060 Hb_002005_050 Hb_002005_050 Hb_114271_010--Hb_002005_050 Hb_001124_230 Hb_001124_230 Hb_010620_030--Hb_001124_230 Hb_010620_030--Hb_000552_010 Hb_003849_070 Hb_003849_070 Hb_010620_030--Hb_003849_070 Hb_000056_110 Hb_000056_110 Hb_010620_030--Hb_000056_110 Hb_010620_030--Hb_000439_020 Hb_001832_170 Hb_001832_170 Hb_000552_010--Hb_001832_170 Hb_002400_300 Hb_002400_300 Hb_000552_010--Hb_002400_300 Hb_000920_100 Hb_000920_100 Hb_000552_010--Hb_000920_100 Hb_000176_050 Hb_000176_050 Hb_000552_010--Hb_000176_050 Hb_001221_240 Hb_001221_240 Hb_000552_010--Hb_001221_240 Hb_016734_040 Hb_016734_040 Hb_042463_010--Hb_016734_040 Hb_041813_040 Hb_041813_040 Hb_042463_010--Hb_041813_040 Hb_042463_010--Hb_001221_240 Hb_042463_010--Hb_000920_100 Hb_042463_010--Hb_169948_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.023451 0.0235525 0.0175807 0.0749334 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0340432 0.172372

CAGE analysis