Hb_129459_010

Information

Type -
Description -
Location Contig129459: 44-598
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08940g
description POPTRDRAFT_751360; hypothetical protein
nr
ID XP_011029372.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
swissprot
ID Q9LS72
description Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
trembl
ID B9GKL9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08940g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_129459_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
2 Hb_001138_030 0.1563224935 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
3 Hb_011161_030 0.1651923169 - - PREDICTED: uncharacterized protein LOC105638906 [Jatropha curcas]
4 Hb_061466_020 0.1799224649 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
5 Hb_000189_430 0.1982096849 - - unnamed protein product [Vitis vinifera]
6 Hb_167508_010 0.2152526594 - - hypothetical protein POPTR_0001s27330g [Populus trichocarpa]
7 Hb_160233_020 0.2229829034 - - -
8 Hb_045481_010 0.2267985659 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
9 Hb_000003_140 0.2375698003 - - hypothetical protein glysoja_047034, partial [Glycine soja]
10 Hb_004994_130 0.2418966647 transcription factor TF Family: MYB PREDICTED: myb-like protein M [Jatropha curcas]
11 Hb_014361_050 0.2463636725 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
12 Hb_000997_010 0.2542499273 - - PREDICTED: FHA domain-containing protein At4g14490 isoform X2 [Jatropha curcas]
13 Hb_161023_010 0.2631347704 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
14 Hb_005155_020 0.2687949611 - - -
15 Hb_005517_010 0.2739248658 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
16 Hb_006286_010 0.2759335023 - - hypothetical protein PRUPE_ppa017148mg [Prunus persica]
17 Hb_001214_170 0.2761324062 - - pyruvate kinase family protein [Medicago truncatula]
18 Hb_188411_010 0.281912898 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
19 Hb_015928_020 0.2830849743 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
20 Hb_014919_020 0.2861092283 - - -

Gene co-expression network

sample Hb_129459_010 Hb_129459_010 Hb_001138_030 Hb_001138_030 Hb_129459_010--Hb_001138_030 Hb_011161_030 Hb_011161_030 Hb_129459_010--Hb_011161_030 Hb_061466_020 Hb_061466_020 Hb_129459_010--Hb_061466_020 Hb_000189_430 Hb_000189_430 Hb_129459_010--Hb_000189_430 Hb_167508_010 Hb_167508_010 Hb_129459_010--Hb_167508_010 Hb_160233_020 Hb_160233_020 Hb_129459_010--Hb_160233_020 Hb_045481_010 Hb_045481_010 Hb_001138_030--Hb_045481_010 Hb_001138_030--Hb_000189_430 Hb_001138_030--Hb_011161_030 Hb_002475_120 Hb_002475_120 Hb_001138_030--Hb_002475_120 Hb_003494_010 Hb_003494_010 Hb_001138_030--Hb_003494_010 Hb_034310_010 Hb_034310_010 Hb_011161_030--Hb_034310_010 Hb_004495_010 Hb_004495_010 Hb_011161_030--Hb_004495_010 Hb_074184_010 Hb_074184_010 Hb_011161_030--Hb_074184_010 Hb_002374_330 Hb_002374_330 Hb_011161_030--Hb_002374_330 Hb_000172_490 Hb_000172_490 Hb_011161_030--Hb_000172_490 Hb_015928_020 Hb_015928_020 Hb_061466_020--Hb_015928_020 Hb_000997_010 Hb_000997_010 Hb_061466_020--Hb_000997_010 Hb_014361_050 Hb_014361_050 Hb_061466_020--Hb_014361_050 Hb_061466_020--Hb_167508_010 Hb_005517_010 Hb_005517_010 Hb_061466_020--Hb_005517_010 Hb_000318_240 Hb_000318_240 Hb_000189_430--Hb_000318_240 Hb_001767_040 Hb_001767_040 Hb_000189_430--Hb_001767_040 Hb_001269_310 Hb_001269_310 Hb_000189_430--Hb_001269_310 Hb_005548_030 Hb_005548_030 Hb_000189_430--Hb_005548_030 Hb_000997_150 Hb_000997_150 Hb_000189_430--Hb_000997_150 Hb_000003_140 Hb_000003_140 Hb_167508_010--Hb_000003_140 Hb_001214_170 Hb_001214_170 Hb_167508_010--Hb_001214_170 Hb_099990_030 Hb_099990_030 Hb_167508_010--Hb_099990_030 Hb_167508_010--Hb_000189_430 Hb_161023_010 Hb_161023_010 Hb_160233_020--Hb_161023_010 Hb_160233_020--Hb_001214_170 Hb_188411_010 Hb_188411_010 Hb_160233_020--Hb_188411_010 Hb_003740_010 Hb_003740_010 Hb_160233_020--Hb_003740_010 Hb_014919_020 Hb_014919_020 Hb_160233_020--Hb_014919_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.630022 0.860085 2.09272 0.649456 1.31679 0.315601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis