Hb_129672_010

Information

Type -
Description -
Location Contig129672: 61-384
Sequence    

Annotation

kegg
ID rcu:RCOM_1431020
description microsomal signal peptidase 23 kD subunit, putative
nr
ID XP_012089096.1
description PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
swissprot
ID Q53YF3
description Signal peptidase complex subunit 3B OS=Arabidopsis thaliana GN=At5g27430 PE=2 SV=1
trembl
ID A0A067JL28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23371 PE=4 SV=1
Gene Ontology
ID GO:0005787
description signal peptidase complex subunit 3b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_129672_010 0.0 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
2 Hb_001250_060 0.0936736925 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
3 Hb_000676_080 0.1012441064 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
4 Hb_000635_070 0.105183049 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
5 Hb_009270_030 0.1059762994 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
6 Hb_082006_010 0.1074427143 - - conserved hypothetical protein [Ricinus communis]
7 Hb_086085_020 0.1237855197 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
8 Hb_000392_190 0.1259215901 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
9 Hb_000453_160 0.1272442246 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
10 Hb_066768_010 0.1279594381 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_001268_050 0.1281662592 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
12 Hb_038237_010 0.1291994 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
13 Hb_054745_010 0.1309176924 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000167_080 0.1331887451 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
15 Hb_001699_100 0.1333416276 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
16 Hb_001747_030 0.1351781883 - - hypothetical protein F383_08210 [Gossypium arboreum]
17 Hb_001135_140 0.1372678432 - - PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]
18 Hb_005489_060 0.1381955347 - - Anamorsin, putative [Ricinus communis]
19 Hb_000074_060 0.1394463031 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
20 Hb_000326_090 0.1396063635 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_129672_010 Hb_129672_010 Hb_001250_060 Hb_001250_060 Hb_129672_010--Hb_001250_060 Hb_000676_080 Hb_000676_080 Hb_129672_010--Hb_000676_080 Hb_000635_070 Hb_000635_070 Hb_129672_010--Hb_000635_070 Hb_009270_030 Hb_009270_030 Hb_129672_010--Hb_009270_030 Hb_082006_010 Hb_082006_010 Hb_129672_010--Hb_082006_010 Hb_086085_020 Hb_086085_020 Hb_129672_010--Hb_086085_020 Hb_066768_010 Hb_066768_010 Hb_001250_060--Hb_066768_010 Hb_003929_270 Hb_003929_270 Hb_001250_060--Hb_003929_270 Hb_000735_110 Hb_000735_110 Hb_001250_060--Hb_000735_110 Hb_000326_090 Hb_000326_090 Hb_001250_060--Hb_000326_090 Hb_000167_080 Hb_000167_080 Hb_001250_060--Hb_000167_080 Hb_005527_020 Hb_005527_020 Hb_000676_080--Hb_005527_020 Hb_054745_010 Hb_054745_010 Hb_000676_080--Hb_054745_010 Hb_004157_100 Hb_004157_100 Hb_000676_080--Hb_004157_100 Hb_000676_080--Hb_001250_060 Hb_002271_020 Hb_002271_020 Hb_000676_080--Hb_002271_020 Hb_000453_160 Hb_000453_160 Hb_000676_080--Hb_000453_160 Hb_000635_070--Hb_082006_010 Hb_000635_070--Hb_009270_030 Hb_016604_030 Hb_016604_030 Hb_000635_070--Hb_016604_030 Hb_004669_030 Hb_004669_030 Hb_000635_070--Hb_004669_030 Hb_002562_110 Hb_002562_110 Hb_000635_070--Hb_002562_110 Hb_009270_030--Hb_082006_010 Hb_009270_030--Hb_002562_110 Hb_030982_020 Hb_030982_020 Hb_009270_030--Hb_030982_020 Hb_011214_100 Hb_011214_100 Hb_009270_030--Hb_011214_100 Hb_082006_010--Hb_002562_110 Hb_002078_260 Hb_002078_260 Hb_082006_010--Hb_002078_260 Hb_041205_010 Hb_041205_010 Hb_082006_010--Hb_041205_010 Hb_000310_090 Hb_000310_090 Hb_086085_020--Hb_000310_090 Hb_086085_020--Hb_003929_270 Hb_000141_080 Hb_000141_080 Hb_086085_020--Hb_000141_080 Hb_008970_030 Hb_008970_030 Hb_086085_020--Hb_008970_030 Hb_002289_080 Hb_002289_080 Hb_086085_020--Hb_002289_080 Hb_000768_210 Hb_000768_210 Hb_086085_020--Hb_000768_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.496 21.4997 52.2829 134.512 30.8799 139.607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.5021 85.9809 50.6188 71.2879 26.4352

CAGE analysis