Hb_129722_010

Information

Type -
Description -
Location Contig129722: 11069-12457
Sequence    

Annotation

kegg
ID pop:POPTR_0004s18150g
description POPTRDRAFT_855472; hypothetical protein
nr
ID XP_012081782.1
description PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
swissprot
ID Q9LDD1
description Probable BOI-related E3 ubiquitin-protein ligase 3 OS=Arabidopsis thaliana GN=BRG3 PE=1 SV=1
trembl
ID A0A067K3N7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18825 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable boi-related e3 ubiquitin-protein ligase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08857: 11854-12237
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_129722_010 0.0 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
2 Hb_000453_150 0.1852701637 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
3 Hb_001749_010 0.2052345887 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
4 Hb_001481_160 0.2067010663 - - PREDICTED: RING-H2 finger protein ATL22-like [Populus euphratica]
5 Hb_000157_200 0.2141537738 - - PREDICTED: putative disease resistance protein RGA4 isoform X3 [Eucalyptus grandis]
6 Hb_013726_070 0.2204676695 - - PREDICTED: UPF0202 protein At1g10490-like [Jatropha curcas]
7 Hb_148121_080 0.2266817632 transcription factor TF Family: C2H2 PREDICTED: protein SHOOT GRAVITROPISM 5 [Populus euphratica]
8 Hb_021420_010 0.2284088739 - - hypothetical protein CICLE_v10029508mg [Citrus clementina]
9 Hb_011794_040 0.2302045918 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Populus euphratica]
10 Hb_000028_160 0.2315166184 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
11 Hb_000326_030 0.2325553141 - - hypothetical protein PRUPE_ppa013909mg [Prunus persica]
12 Hb_001218_050 0.238201897 - - Ribosome-binding protein, putative [Ricinus communis]
13 Hb_003203_020 0.2393674007 - - unknown [Lotus japonicus]
14 Hb_002863_100 0.240244812 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
15 Hb_008177_030 0.2435656246 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000098_020 0.2447521971 transcription factor TF Family: GRAS GRAS family transcription factor family protein [Theobroma cacao]
17 Hb_000317_330 0.2460533381 - - PREDICTED: RNA-binding protein 38-like [Jatropha curcas]
18 Hb_000347_500 0.2491505466 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
19 Hb_001677_060 0.253375781 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
20 Hb_000322_180 0.253494885 - - recA family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_129722_010 Hb_129722_010 Hb_000453_150 Hb_000453_150 Hb_129722_010--Hb_000453_150 Hb_001749_010 Hb_001749_010 Hb_129722_010--Hb_001749_010 Hb_001481_160 Hb_001481_160 Hb_129722_010--Hb_001481_160 Hb_000157_200 Hb_000157_200 Hb_129722_010--Hb_000157_200 Hb_013726_070 Hb_013726_070 Hb_129722_010--Hb_013726_070 Hb_148121_080 Hb_148121_080 Hb_129722_010--Hb_148121_080 Hb_077048_010 Hb_077048_010 Hb_000453_150--Hb_077048_010 Hb_000537_140 Hb_000537_140 Hb_000453_150--Hb_000537_140 Hb_000453_150--Hb_000157_200 Hb_009367_080 Hb_009367_080 Hb_000453_150--Hb_009367_080 Hb_000322_180 Hb_000322_180 Hb_000453_150--Hb_000322_180 Hb_005260_040 Hb_005260_040 Hb_000453_150--Hb_005260_040 Hb_000326_030 Hb_000326_030 Hb_001749_010--Hb_000326_030 Hb_001606_080 Hb_001606_080 Hb_001749_010--Hb_001606_080 Hb_002735_040 Hb_002735_040 Hb_001749_010--Hb_002735_040 Hb_000347_500 Hb_000347_500 Hb_001749_010--Hb_000347_500 Hb_000415_060 Hb_000415_060 Hb_001749_010--Hb_000415_060 Hb_162150_010 Hb_162150_010 Hb_001481_160--Hb_162150_010 Hb_002693_060 Hb_002693_060 Hb_001481_160--Hb_002693_060 Hb_006698_040 Hb_006698_040 Hb_001481_160--Hb_006698_040 Hb_001160_070 Hb_001160_070 Hb_001481_160--Hb_001160_070 Hb_008221_170 Hb_008221_170 Hb_001481_160--Hb_008221_170 Hb_000856_180 Hb_000856_180 Hb_001481_160--Hb_000856_180 Hb_003203_020 Hb_003203_020 Hb_000157_200--Hb_003203_020 Hb_003430_060 Hb_003430_060 Hb_000157_200--Hb_003430_060 Hb_000336_270 Hb_000336_270 Hb_000157_200--Hb_000336_270 Hb_010697_040 Hb_010697_040 Hb_000157_200--Hb_010697_040 Hb_002081_120 Hb_002081_120 Hb_000157_200--Hb_002081_120 Hb_000046_070 Hb_000046_070 Hb_000157_200--Hb_000046_070 Hb_013726_070--Hb_001481_160 Hb_013726_070--Hb_162150_010 Hb_000071_170 Hb_000071_170 Hb_013726_070--Hb_000071_170 Hb_002344_060 Hb_002344_060 Hb_013726_070--Hb_002344_060 Hb_004586_350 Hb_004586_350 Hb_013726_070--Hb_004586_350 Hb_000441_150 Hb_000441_150 Hb_013726_070--Hb_000441_150 Hb_000317_330 Hb_000317_330 Hb_148121_080--Hb_000317_330 Hb_010560_060 Hb_010560_060 Hb_148121_080--Hb_010560_060 Hb_148121_080--Hb_000157_200 Hb_005288_200 Hb_005288_200 Hb_148121_080--Hb_005288_200 Hb_148121_080--Hb_003203_020 Hb_000028_160 Hb_000028_160 Hb_148121_080--Hb_000028_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.3433 11.1494 6.79147 12.7112 0.630698 15.4473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.23993 2.70719 5.4948 14.7023 1.66761

CAGE analysis