Hb_129910_010

Information

Type -
Description -
Location Contig129910: 1-810
Sequence    

Annotation

kegg
ID pop:POPTR_0002s17470g
description POPTRDRAFT_1072396; hypothetical protein
nr
ID XP_011023150.1
description PREDICTED: F-box-like/WD repeat-containing protein TBL1X [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GR39
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s17470g PE=4 SV=2
Gene Ontology
ID GO:0005515
description transducin wd40 repeat superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_129910_010 0.0 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1X [Populus euphratica]
2 Hb_000340_390 0.1167050946 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
3 Hb_000283_080 0.1234435178 - - -
4 Hb_001898_070 0.1313295609 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16610 [Jatropha curcas]
5 Hb_042202_030 0.132012981 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
6 Hb_000020_120 0.1366046489 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
7 Hb_003688_150 0.1401056979 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
8 Hb_000865_060 0.1401478317 transcription factor TF Family: FAR1 hypothetical protein CISIN_1g043648mg [Citrus sinensis]
9 Hb_009113_070 0.1455601237 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
10 Hb_172932_010 0.1466032618 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_001486_180 0.1484305321 - - hypothetical protein B456_007G260200 [Gossypium raimondii]
12 Hb_001811_030 0.1487295384 - - Beta-ureidopropionase, putative [Ricinus communis]
13 Hb_000362_120 0.1508871223 - - glutamate receptor 2 plant, putative [Ricinus communis]
14 Hb_001454_190 0.1508941068 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
15 Hb_002307_170 0.1510699319 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
16 Hb_003291_010 0.1520949867 - - ATP-dependent protease La, putative [Ricinus communis]
17 Hb_015175_020 0.1530030805 - - hypothetical protein JCGZ_14452 [Jatropha curcas]
18 Hb_011534_030 0.1553357107 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
19 Hb_001619_070 0.1554485818 - - PREDICTED: uncharacterized protein LOC103503585 [Cucumis melo]
20 Hb_001090_050 0.1559685923 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_129910_010 Hb_129910_010 Hb_000340_390 Hb_000340_390 Hb_129910_010--Hb_000340_390 Hb_000283_080 Hb_000283_080 Hb_129910_010--Hb_000283_080 Hb_001898_070 Hb_001898_070 Hb_129910_010--Hb_001898_070 Hb_042202_030 Hb_042202_030 Hb_129910_010--Hb_042202_030 Hb_000020_120 Hb_000020_120 Hb_129910_010--Hb_000020_120 Hb_003688_150 Hb_003688_150 Hb_129910_010--Hb_003688_150 Hb_000367_060 Hb_000367_060 Hb_000340_390--Hb_000367_060 Hb_001454_190 Hb_001454_190 Hb_000340_390--Hb_001454_190 Hb_003687_240 Hb_003687_240 Hb_000340_390--Hb_003687_240 Hb_001959_190 Hb_001959_190 Hb_000340_390--Hb_001959_190 Hb_004607_050 Hb_004607_050 Hb_000340_390--Hb_004607_050 Hb_001811_030 Hb_001811_030 Hb_000340_390--Hb_001811_030 Hb_001511_070 Hb_001511_070 Hb_000283_080--Hb_001511_070 Hb_002307_170 Hb_002307_170 Hb_000283_080--Hb_002307_170 Hb_000283_080--Hb_001898_070 Hb_000122_210 Hb_000122_210 Hb_000283_080--Hb_000122_210 Hb_000283_080--Hb_000020_120 Hb_001898_070--Hb_002307_170 Hb_004846_070 Hb_004846_070 Hb_001898_070--Hb_004846_070 Hb_000002_050 Hb_000002_050 Hb_001898_070--Hb_000002_050 Hb_002585_020 Hb_002585_020 Hb_001898_070--Hb_002585_020 Hb_001898_070--Hb_000340_390 Hb_001898_070--Hb_001454_190 Hb_007747_210 Hb_007747_210 Hb_042202_030--Hb_007747_210 Hb_042202_030--Hb_000020_120 Hb_042202_030--Hb_003688_150 Hb_002799_070 Hb_002799_070 Hb_042202_030--Hb_002799_070 Hb_079312_010 Hb_079312_010 Hb_042202_030--Hb_079312_010 Hb_000116_430 Hb_000116_430 Hb_042202_030--Hb_000116_430 Hb_000479_140 Hb_000479_140 Hb_000020_120--Hb_000479_140 Hb_000406_130 Hb_000406_130 Hb_000020_120--Hb_000406_130 Hb_007416_060 Hb_007416_060 Hb_000020_120--Hb_007416_060 Hb_008725_170 Hb_008725_170 Hb_000020_120--Hb_008725_170 Hb_003376_250 Hb_003376_250 Hb_000020_120--Hb_003376_250 Hb_000783_020 Hb_000783_020 Hb_003688_150--Hb_000783_020 Hb_000120_460 Hb_000120_460 Hb_003688_150--Hb_000120_460 Hb_001619_070 Hb_001619_070 Hb_003688_150--Hb_001619_070 Hb_001318_270 Hb_001318_270 Hb_003688_150--Hb_001318_270 Hb_103118_010 Hb_103118_010 Hb_003688_150--Hb_103118_010 Hb_086639_040 Hb_086639_040 Hb_003688_150--Hb_086639_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.969312 1.31756 0.476881 1.02487 2.56278 1.79406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.65541 2.50557 6.33351 3.94932 3.2523

CAGE analysis