Hb_129996_010

Information

Type -
Description -
Location Contig129996: 1186-1757
Sequence    

Annotation

kegg
ID pmum:103331952
description RING-box protein 1a-like
nr
ID XP_007218617.1
description hypothetical protein PRUPE_ppa013547mg [Prunus persica]
swissprot
ID Q940X7
description RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1
trembl
ID M5X2V0
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013547mg PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-box protein 1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_129996_010 0.0 - - hypothetical protein PRUPE_ppa013547mg [Prunus persica]
2 Hb_001782_100 0.1181870858 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
3 Hb_024682_030 0.1223381693 - - PREDICTED: DNA replication licensing factor MCM2 [Jatropha curcas]
4 Hb_007590_110 0.1301688167 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
5 Hb_000417_140 0.1343166669 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
6 Hb_006351_030 0.1449197234 - - PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Jatropha curcas]
7 Hb_003674_020 0.1461651235 - - PREDICTED: DNA replication licensing factor MCM6 [Jatropha curcas]
8 Hb_000431_100 0.146584044 - - ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
9 Hb_000152_590 0.1494593429 - - PREDICTED: 21 kDa protein [Jatropha curcas]
10 Hb_000024_150 0.1501635111 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
11 Hb_001823_090 0.1534176859 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000010_440 0.1551169262 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
13 Hb_001597_030 0.1558429277 - - PREDICTED: uncharacterized protein LOC104445128 isoform X1 [Eucalyptus grandis]
14 Hb_000592_100 0.1560301852 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
15 Hb_000046_240 0.1572968835 - - PREDICTED: uncharacterized protein LOC105631837 [Jatropha curcas]
16 Hb_001040_080 0.1599256854 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
17 Hb_000535_040 0.1606560225 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
18 Hb_000749_120 0.1606706811 - - PREDICTED: uncharacterized protein LOC105644255 isoform X2 [Jatropha curcas]
19 Hb_027556_060 0.1616197561 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
20 Hb_000093_090 0.1626623396 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]

Gene co-expression network

sample Hb_129996_010 Hb_129996_010 Hb_001782_100 Hb_001782_100 Hb_129996_010--Hb_001782_100 Hb_024682_030 Hb_024682_030 Hb_129996_010--Hb_024682_030 Hb_007590_110 Hb_007590_110 Hb_129996_010--Hb_007590_110 Hb_000417_140 Hb_000417_140 Hb_129996_010--Hb_000417_140 Hb_006351_030 Hb_006351_030 Hb_129996_010--Hb_006351_030 Hb_003674_020 Hb_003674_020 Hb_129996_010--Hb_003674_020 Hb_001782_100--Hb_006351_030 Hb_000152_590 Hb_000152_590 Hb_001782_100--Hb_000152_590 Hb_001782_100--Hb_007590_110 Hb_001782_100--Hb_024682_030 Hb_010672_010 Hb_010672_010 Hb_001782_100--Hb_010672_010 Hb_000535_040 Hb_000535_040 Hb_001782_100--Hb_000535_040 Hb_003360_010 Hb_003360_010 Hb_024682_030--Hb_003360_010 Hb_000592_100 Hb_000592_100 Hb_024682_030--Hb_000592_100 Hb_000431_100 Hb_000431_100 Hb_024682_030--Hb_000431_100 Hb_001524_120 Hb_001524_120 Hb_024682_030--Hb_001524_120 Hb_000024_150 Hb_000024_150 Hb_024682_030--Hb_000024_150 Hb_000316_060 Hb_000316_060 Hb_007590_110--Hb_000316_060 Hb_007590_110--Hb_024682_030 Hb_007590_110--Hb_006351_030 Hb_007590_110--Hb_000417_140 Hb_001252_050 Hb_001252_050 Hb_000417_140--Hb_001252_050 Hb_006711_040 Hb_006711_040 Hb_000417_140--Hb_006711_040 Hb_000272_010 Hb_000272_010 Hb_000417_140--Hb_000272_010 Hb_008143_050 Hb_008143_050 Hb_000417_140--Hb_008143_050 Hb_000417_140--Hb_024682_030 Hb_000417_140--Hb_000535_040 Hb_001025_100 Hb_001025_100 Hb_006351_030--Hb_001025_100 Hb_000098_270 Hb_000098_270 Hb_006351_030--Hb_000098_270 Hb_006351_030--Hb_000152_590 Hb_000878_120 Hb_000878_120 Hb_006351_030--Hb_000878_120 Hb_006916_120 Hb_006916_120 Hb_006351_030--Hb_006916_120 Hb_003674_020--Hb_007590_110 Hb_004846_080 Hb_004846_080 Hb_003674_020--Hb_004846_080 Hb_001476_130 Hb_001476_130 Hb_003674_020--Hb_001476_130 Hb_000696_030 Hb_000696_030 Hb_003674_020--Hb_000696_030 Hb_003674_020--Hb_001782_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.465239 3.51548 26.0538 27.766 1.92693 0.186991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.715239 0 12.1765 5.27801

CAGE analysis