Hb_130177_010

Information

Type -
Description -
Location Contig130177: 31-418
Sequence    

Annotation

kegg
ID rcu:RCOM_0897890
description hypothetical protein
nr
ID XP_002517573.1
description hypothetical protein RCOM_0897890 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RV04
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0897890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130177_010 0.0 - - hypothetical protein RCOM_0897890 [Ricinus communis]
2 Hb_098315_110 0.1090200623 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010931_110 0.1172388097 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_006029_010 0.1271484097 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
5 Hb_000300_540 0.1274565062 - - PREDICTED: syntaxin-132 [Jatropha curcas]
6 Hb_010368_070 0.1278993097 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000987_050 0.1286870473 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
8 Hb_001198_090 0.1308493639 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
9 Hb_000317_080 0.1334948571 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
10 Hb_000300_530 0.1380804031 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
11 Hb_001341_040 0.1390584018 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
12 Hb_000491_080 0.1398657516 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
13 Hb_043959_010 0.1412168422 - - PREDICTED: transcriptional activator DEMETER isoform X2 [Jatropha curcas]
14 Hb_053543_010 0.1436699405 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000173_370 0.144129813 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
16 Hb_002276_190 0.1448167978 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
17 Hb_000395_140 0.1467134953 - - Oligopeptide transporter, putative [Ricinus communis]
18 Hb_005228_120 0.1468221442 - - phospholipase d beta, putative [Ricinus communis]
19 Hb_011609_190 0.147325701 - - 14-3-3 protein 2 [Hevea brasiliensis]
20 Hb_002172_030 0.1475750793 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_130177_010 Hb_130177_010 Hb_098315_110 Hb_098315_110 Hb_130177_010--Hb_098315_110 Hb_010931_110 Hb_010931_110 Hb_130177_010--Hb_010931_110 Hb_006029_010 Hb_006029_010 Hb_130177_010--Hb_006029_010 Hb_000300_540 Hb_000300_540 Hb_130177_010--Hb_000300_540 Hb_010368_070 Hb_010368_070 Hb_130177_010--Hb_010368_070 Hb_000987_050 Hb_000987_050 Hb_130177_010--Hb_000987_050 Hb_000300_530 Hb_000300_530 Hb_098315_110--Hb_000300_530 Hb_001268_230 Hb_001268_230 Hb_098315_110--Hb_001268_230 Hb_004648_040 Hb_004648_040 Hb_098315_110--Hb_004648_040 Hb_000317_080 Hb_000317_080 Hb_098315_110--Hb_000317_080 Hb_098315_110--Hb_006029_010 Hb_001198_090 Hb_001198_090 Hb_010931_110--Hb_001198_090 Hb_143629_050 Hb_143629_050 Hb_010931_110--Hb_143629_050 Hb_004032_240 Hb_004032_240 Hb_010931_110--Hb_004032_240 Hb_010931_110--Hb_000987_050 Hb_053543_010 Hb_053543_010 Hb_010931_110--Hb_053543_010 Hb_000161_030 Hb_000161_030 Hb_006029_010--Hb_000161_030 Hb_004156_060 Hb_004156_060 Hb_006029_010--Hb_004156_060 Hb_000491_080 Hb_000491_080 Hb_006029_010--Hb_000491_080 Hb_007786_010 Hb_007786_010 Hb_006029_010--Hb_007786_010 Hb_182026_010 Hb_182026_010 Hb_006029_010--Hb_182026_010 Hb_000733_060 Hb_000733_060 Hb_006029_010--Hb_000733_060 Hb_000300_540--Hb_007786_010 Hb_004032_460 Hb_004032_460 Hb_000300_540--Hb_004032_460 Hb_000062_230 Hb_000062_230 Hb_000300_540--Hb_000062_230 Hb_002172_030 Hb_002172_030 Hb_000300_540--Hb_002172_030 Hb_000363_340 Hb_000363_340 Hb_000300_540--Hb_000363_340 Hb_000173_370 Hb_000173_370 Hb_000300_540--Hb_000173_370 Hb_000525_040 Hb_000525_040 Hb_010368_070--Hb_000525_040 Hb_002903_120 Hb_002903_120 Hb_010368_070--Hb_002903_120 Hb_010368_070--Hb_004032_460 Hb_001628_110 Hb_001628_110 Hb_010368_070--Hb_001628_110 Hb_010368_070--Hb_002172_030 Hb_000050_120 Hb_000050_120 Hb_010368_070--Hb_000050_120 Hb_000987_050--Hb_053543_010 Hb_000987_050--Hb_000317_080 Hb_043959_010 Hb_043959_010 Hb_000987_050--Hb_043959_010 Hb_000987_050--Hb_098315_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.7666 3.25493 4.41342 1.43713 50.008 16.2301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.51455 8.30428 14.2145 5.51423 1.15529

CAGE analysis