Hb_130222_010

Information

Type -
Description -
Location Contig130222: 16386-17056
Sequence    

Annotation

kegg
ID rcu:RCOM_1272620
description hypothetical protein
nr
ID XP_002523685.1
description hypothetical protein RCOM_1272620 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SCG6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1272620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09056: 6090-17196
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130222_010 0.0 - - hypothetical protein RCOM_1272620 [Ricinus communis]
2 Hb_113974_010 0.1321380388 - - DNA binding protein, putative [Ricinus communis]
3 Hb_000056_290 0.1467826121 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000162_160 0.1475425996 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
5 Hb_078448_010 0.1508256528 - - hypothetical protein L484_017526 [Morus notabilis]
6 Hb_006573_310 0.1535880585 - - Tellurite resistance protein tehA, putative [Ricinus communis]
7 Hb_000083_280 0.1559437282 - - copper ion binding protein, putative [Ricinus communis]
8 Hb_039812_010 0.156478367 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
9 Hb_001377_370 0.1580383299 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
10 Hb_000527_020 0.1594658234 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
11 Hb_001168_030 0.1601957421 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
12 Hb_003376_110 0.1607771314 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007245_030 0.1641768362 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000160_110 0.1664743331 - - PREDICTED: uncharacterized protein LOC100253584 [Vitis vinifera]
15 Hb_004225_160 0.1674587548 - - PREDICTED: kiwellin-like [Jatropha curcas]
16 Hb_001329_050 0.1681478943 - - conserved hypothetical protein [Ricinus communis]
17 Hb_120289_010 0.1683545496 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
18 Hb_003207_210 0.1696394908 - - PREDICTED: uncharacterized protein LOC105645885 [Jatropha curcas]
19 Hb_004241_160 0.1698200463 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-7 [Jatropha curcas]
20 Hb_001662_120 0.170256794 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_130222_010 Hb_130222_010 Hb_113974_010 Hb_113974_010 Hb_130222_010--Hb_113974_010 Hb_000056_290 Hb_000056_290 Hb_130222_010--Hb_000056_290 Hb_000162_160 Hb_000162_160 Hb_130222_010--Hb_000162_160 Hb_078448_010 Hb_078448_010 Hb_130222_010--Hb_078448_010 Hb_006573_310 Hb_006573_310 Hb_130222_010--Hb_006573_310 Hb_000083_280 Hb_000083_280 Hb_130222_010--Hb_000083_280 Hb_003641_040 Hb_003641_040 Hb_113974_010--Hb_003641_040 Hb_000160_110 Hb_000160_110 Hb_113974_010--Hb_000160_110 Hb_004241_160 Hb_004241_160 Hb_113974_010--Hb_004241_160 Hb_113974_010--Hb_000083_280 Hb_008226_050 Hb_008226_050 Hb_113974_010--Hb_008226_050 Hb_000527_030 Hb_000527_030 Hb_113974_010--Hb_000527_030 Hb_001329_050 Hb_001329_050 Hb_000056_290--Hb_001329_050 Hb_120289_010 Hb_120289_010 Hb_000056_290--Hb_120289_010 Hb_000056_290--Hb_006573_310 Hb_000933_040 Hb_000933_040 Hb_000056_290--Hb_000933_040 Hb_000056_290--Hb_078448_010 Hb_000527_020 Hb_000527_020 Hb_000056_290--Hb_000527_020 Hb_001322_220 Hb_001322_220 Hb_000162_160--Hb_001322_220 Hb_000162_160--Hb_000527_020 Hb_000162_160--Hb_120289_010 Hb_001190_030 Hb_001190_030 Hb_000162_160--Hb_001190_030 Hb_056196_020 Hb_056196_020 Hb_000162_160--Hb_056196_020 Hb_022845_010 Hb_022845_010 Hb_000162_160--Hb_022845_010 Hb_005398_050 Hb_005398_050 Hb_078448_010--Hb_005398_050 Hb_078448_010--Hb_006573_310 Hb_078448_010--Hb_000527_020 Hb_118282_020 Hb_118282_020 Hb_078448_010--Hb_118282_020 Hb_004774_080 Hb_004774_080 Hb_078448_010--Hb_004774_080 Hb_006573_310--Hb_004774_080 Hb_007245_030 Hb_007245_030 Hb_006573_310--Hb_007245_030 Hb_005914_100 Hb_005914_100 Hb_006573_310--Hb_005914_100 Hb_006573_310--Hb_004241_160 Hb_006573_310--Hb_000527_020 Hb_039812_010 Hb_039812_010 Hb_000083_280--Hb_039812_010 Hb_004422_030 Hb_004422_030 Hb_000083_280--Hb_004422_030 Hb_000083_280--Hb_000527_030 Hb_000283_090 Hb_000283_090 Hb_000083_280--Hb_000283_090 Hb_004007_080 Hb_004007_080 Hb_000083_280--Hb_004007_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.351176 0.480703 6.79905 3.87538 0.0817056 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0325444 0.307153

CAGE analysis