Hb_130235_010

Information

Type -
Description -
Location Contig130235: 382-1424
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23310g
description POPTRDRAFT_659917; Rab-like GTP-ase family protein
nr
ID XP_012080957.1
description PREDICTED: ras-related protein RABF1 [Jatropha curcas]
swissprot
ID Q9CB01
description Ras-related protein RABF1 OS=Arabidopsis thaliana GN=RABF1 PE=1 SV=1
trembl
ID A0A067KF37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16153 PE=3 SV=1
Gene Ontology
ID GO:0005769
description ras-related protein rabf1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130235_010 0.0 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
2 Hb_003018_050 0.0769989596 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
3 Hb_004125_110 0.0954513204 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
4 Hb_001054_100 0.0976716918 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
5 Hb_007735_030 0.0990932178 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
6 Hb_140543_010 0.1007070939 - - -
7 Hb_001754_070 0.1048811347 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
8 Hb_000122_020 0.1069380575 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]
9 Hb_172706_030 0.1081152624 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
10 Hb_002631_020 0.1084860803 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
11 Hb_008695_050 0.1090294872 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001047_240 0.1142128873 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
13 Hb_000707_030 0.114277373 - - PREDICTED: probable proteasome inhibitor [Vitis vinifera]
14 Hb_000975_110 0.1157417915 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
15 Hb_001307_090 0.1158475586 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
16 Hb_004659_060 0.1160253699 - - RAS-related GTP-binding family protein [Populus trichocarpa]
17 Hb_000326_090 0.1169071759 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
18 Hb_006915_040 0.1186129082 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
19 Hb_001158_150 0.1187834449 - - hypothetical protein JCGZ_26407 [Jatropha curcas]
20 Hb_017491_060 0.1195963243 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_130235_010 Hb_130235_010 Hb_003018_050 Hb_003018_050 Hb_130235_010--Hb_003018_050 Hb_004125_110 Hb_004125_110 Hb_130235_010--Hb_004125_110 Hb_001054_100 Hb_001054_100 Hb_130235_010--Hb_001054_100 Hb_007735_030 Hb_007735_030 Hb_130235_010--Hb_007735_030 Hb_140543_010 Hb_140543_010 Hb_130235_010--Hb_140543_010 Hb_001754_070 Hb_001754_070 Hb_130235_010--Hb_001754_070 Hb_002631_020 Hb_002631_020 Hb_003018_050--Hb_002631_020 Hb_006452_040 Hb_006452_040 Hb_003018_050--Hb_006452_040 Hb_003018_050--Hb_004125_110 Hb_001158_150 Hb_001158_150 Hb_003018_050--Hb_001158_150 Hb_000122_020 Hb_000122_020 Hb_003018_050--Hb_000122_020 Hb_003226_210 Hb_003226_210 Hb_004125_110--Hb_003226_210 Hb_001214_160 Hb_001214_160 Hb_004125_110--Hb_001214_160 Hb_000997_120 Hb_000997_120 Hb_004125_110--Hb_000997_120 Hb_000134_070 Hb_000134_070 Hb_004125_110--Hb_000134_070 Hb_002660_030 Hb_002660_030 Hb_004125_110--Hb_002660_030 Hb_001054_100--Hb_000122_020 Hb_001824_010 Hb_001824_010 Hb_001054_100--Hb_001824_010 Hb_008695_050 Hb_008695_050 Hb_001054_100--Hb_008695_050 Hb_005307_050 Hb_005307_050 Hb_001054_100--Hb_005307_050 Hb_017491_060 Hb_017491_060 Hb_001054_100--Hb_017491_060 Hb_004032_100 Hb_004032_100 Hb_007735_030--Hb_004032_100 Hb_000707_030 Hb_000707_030 Hb_007735_030--Hb_000707_030 Hb_005400_030 Hb_005400_030 Hb_007735_030--Hb_005400_030 Hb_002296_040 Hb_002296_040 Hb_007735_030--Hb_002296_040 Hb_180301_010 Hb_180301_010 Hb_007735_030--Hb_180301_010 Hb_000024_030 Hb_000024_030 Hb_007735_030--Hb_000024_030 Hb_140543_010--Hb_001754_070 Hb_172706_030 Hb_172706_030 Hb_140543_010--Hb_172706_030 Hb_000656_340 Hb_000656_340 Hb_140543_010--Hb_000656_340 Hb_000086_550 Hb_000086_550 Hb_140543_010--Hb_000086_550 Hb_005357_130 Hb_005357_130 Hb_140543_010--Hb_005357_130 Hb_005667_040 Hb_005667_040 Hb_001754_070--Hb_005667_040 Hb_001754_070--Hb_001158_150 Hb_001754_070--Hb_004125_110 Hb_000326_090 Hb_000326_090 Hb_001754_070--Hb_000326_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.1977 26.7008 26.5027 141.914 39.2001 108.903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
175.544 220.928 91.9648 84.0937 24.8396

CAGE analysis