Hb_130250_010

Information

Type -
Description -
Location Contig130250: 108-932
Sequence    

Annotation

kegg
ID mdm:103426476
description disease resistance protein RGA2-like
nr
ID KHG15117.1
description Putative disease resistance RGA4 [Gossypium arboreum]
swissprot
ID P0CB16
description Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2
trembl
ID A0A0B0NR30
description Putative disease resistance RGA4 OS=Gossypium arboreum GN=F383_17247 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09057: 120-641
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130250_010 0.0 - - Putative disease resistance RGA4 [Gossypium arboreum]
2 Hb_134813_010 0.1764799069 - - aldo/keto reductase, putative [Ricinus communis]
3 Hb_006775_110 0.1978401162 - - PREDICTED: uncharacterized protein LOC105649734 [Jatropha curcas]
4 Hb_002411_020 0.2034616154 - - hypothetical protein JCGZ_24577 [Jatropha curcas]
5 Hb_000230_170 0.2096863042 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
6 Hb_000997_320 0.2121114095 - - PREDICTED: acylamino-acid-releasing enzyme-like [Malus domestica]
7 Hb_021428_010 0.2157302013 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
8 Hb_000457_250 0.21970417 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
9 Hb_000260_740 0.2251081183 - - -
10 Hb_182424_020 0.2256827973 - - hypothetical protein POPTR_0006s24190g [Populus trichocarpa]
11 Hb_000023_050 0.2298060936 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
12 Hb_178968_080 0.2316387718 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X2 [Jatropha curcas]
13 Hb_002874_030 0.2318331137 - - hypothetical protein JCGZ_07001 [Jatropha curcas]
14 Hb_082550_010 0.2340983927 - - hypothetical protein CISIN_1g0081081mg, partial [Citrus sinensis]
15 Hb_000300_680 0.2357865935 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
16 Hb_000163_110 0.2359515254 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
17 Hb_002284_270 0.2386649351 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
18 Hb_057556_010 0.2389329894 - - Light-regulated protein precursor, putative [Ricinus communis]
19 Hb_009393_140 0.2391171865 - - PREDICTED: uncharacterized protein LOC105638053 isoform X1 [Jatropha curcas]
20 Hb_000210_080 0.2392534219 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_130250_010 Hb_130250_010 Hb_134813_010 Hb_134813_010 Hb_130250_010--Hb_134813_010 Hb_006775_110 Hb_006775_110 Hb_130250_010--Hb_006775_110 Hb_002411_020 Hb_002411_020 Hb_130250_010--Hb_002411_020 Hb_000230_170 Hb_000230_170 Hb_130250_010--Hb_000230_170 Hb_000997_320 Hb_000997_320 Hb_130250_010--Hb_000997_320 Hb_021428_010 Hb_021428_010 Hb_130250_010--Hb_021428_010 Hb_000035_020 Hb_000035_020 Hb_134813_010--Hb_000035_020 Hb_031330_020 Hb_031330_020 Hb_134813_010--Hb_031330_020 Hb_000300_680 Hb_000300_680 Hb_134813_010--Hb_000300_680 Hb_002305_010 Hb_002305_010 Hb_134813_010--Hb_002305_010 Hb_000866_050 Hb_000866_050 Hb_134813_010--Hb_000866_050 Hb_003778_020 Hb_003778_020 Hb_134813_010--Hb_003778_020 Hb_001488_350 Hb_001488_350 Hb_006775_110--Hb_001488_350 Hb_006775_110--Hb_000230_170 Hb_024570_030 Hb_024570_030 Hb_006775_110--Hb_024570_030 Hb_039435_010 Hb_039435_010 Hb_006775_110--Hb_039435_010 Hb_001916_030 Hb_001916_030 Hb_006775_110--Hb_001916_030 Hb_004374_160 Hb_004374_160 Hb_006775_110--Hb_004374_160 Hb_000890_110 Hb_000890_110 Hb_002411_020--Hb_000890_110 Hb_002411_020--Hb_134813_010 Hb_002411_020--Hb_000300_680 Hb_001054_010 Hb_001054_010 Hb_002411_020--Hb_001054_010 Hb_021313_010 Hb_021313_010 Hb_002411_020--Hb_021313_010 Hb_001054_060 Hb_001054_060 Hb_000230_170--Hb_001054_060 Hb_182424_020 Hb_182424_020 Hb_000230_170--Hb_182424_020 Hb_000054_030 Hb_000054_030 Hb_000230_170--Hb_000054_030 Hb_178968_080 Hb_178968_080 Hb_000230_170--Hb_178968_080 Hb_012132_020 Hb_012132_020 Hb_000230_170--Hb_012132_020 Hb_036388_010 Hb_036388_010 Hb_000997_320--Hb_036388_010 Hb_001195_370 Hb_001195_370 Hb_000997_320--Hb_001195_370 Hb_030312_030 Hb_030312_030 Hb_000997_320--Hb_030312_030 Hb_000997_320--Hb_001054_060 Hb_000768_150 Hb_000768_150 Hb_000997_320--Hb_000768_150 Hb_000329_080 Hb_000329_080 Hb_000997_320--Hb_000329_080 Hb_002529_070 Hb_002529_070 Hb_021428_010--Hb_002529_070 Hb_000260_740 Hb_000260_740 Hb_021428_010--Hb_000260_740 Hb_004021_020 Hb_004021_020 Hb_021428_010--Hb_004021_020 Hb_005288_060 Hb_005288_060 Hb_021428_010--Hb_005288_060 Hb_016835_020 Hb_016835_020 Hb_021428_010--Hb_016835_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0236058 0.220834 0.371269 0 0.0336213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.194398 0.0509537 0 0.30904 0.820727

CAGE analysis