Hb_130323_010

Information

Type -
Description -
Location Contig130323: 44-820
Sequence    

Annotation

kegg
ID rcu:RCOM_0812380
description Myosin heavy chain, fast skeletal muscle, embryonic, putative
nr
ID XP_002518728.1
description Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
swissprot
ID Q9SLN1
description Filament-like plant protein 7 OS=Arabidopsis thaliana GN=FPP7 PE=3 SV=2
trembl
ID B9RYE4
description Myosin heavy chain, fast skeletal muscle, embryonic, putative OS=Ricinus communis GN=RCOM_0812380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130323_010 0.0 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
2 Hb_009485_020 0.1195237931 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
3 Hb_000544_180 0.1333847273 - - PREDICTED: probable auxin efflux carrier component 1c isoform X1 [Jatropha curcas]
4 Hb_003858_040 0.1388480043 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
5 Hb_000300_320 0.1423955898 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
6 Hb_001396_280 0.1453200714 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
7 Hb_000983_170 0.1515551104 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
8 Hb_073973_160 0.1515847031 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
9 Hb_002837_060 0.1544073253 - - PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
10 Hb_029866_100 0.1552482032 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
11 Hb_001486_070 0.1572906914 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
12 Hb_004466_040 0.1580959712 - - PREDICTED: protein RER1B-like [Gossypium raimondii]
13 Hb_000453_100 0.1585479289 - - PREDICTED: metallothionein-like protein 1 [Sesamum indicum]
14 Hb_000703_210 0.1585709469 - - Inactive protein kinase [Gossypium arboreum]
15 Hb_001882_110 0.1601635884 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
16 Hb_000376_090 0.1646043974 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
17 Hb_000733_050 0.165393953 - - PREDICTED: uncharacterized protein LOC105646910 isoform X2 [Jatropha curcas]
18 Hb_078477_050 0.1678207233 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
19 Hb_001500_110 0.169438979 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_028707_080 0.1696166553 - - plasma membrane aquaporin 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_130323_010 Hb_130323_010 Hb_009485_020 Hb_009485_020 Hb_130323_010--Hb_009485_020 Hb_000544_180 Hb_000544_180 Hb_130323_010--Hb_000544_180 Hb_003858_040 Hb_003858_040 Hb_130323_010--Hb_003858_040 Hb_000300_320 Hb_000300_320 Hb_130323_010--Hb_000300_320 Hb_001396_280 Hb_001396_280 Hb_130323_010--Hb_001396_280 Hb_000983_170 Hb_000983_170 Hb_130323_010--Hb_000983_170 Hb_009485_020--Hb_003858_040 Hb_009485_020--Hb_001396_280 Hb_029866_100 Hb_029866_100 Hb_009485_020--Hb_029866_100 Hb_000733_050 Hb_000733_050 Hb_009485_020--Hb_000733_050 Hb_003894_040 Hb_003894_040 Hb_009485_020--Hb_003894_040 Hb_002217_380 Hb_002217_380 Hb_000544_180--Hb_002217_380 Hb_000544_180--Hb_009485_020 Hb_002235_130 Hb_002235_130 Hb_000544_180--Hb_002235_130 Hb_086022_010 Hb_086022_010 Hb_000544_180--Hb_086022_010 Hb_002783_250 Hb_002783_250 Hb_000544_180--Hb_002783_250 Hb_000009_480 Hb_000009_480 Hb_003858_040--Hb_000009_480 Hb_073973_160 Hb_073973_160 Hb_003858_040--Hb_073973_160 Hb_001050_010 Hb_001050_010 Hb_003858_040--Hb_001050_010 Hb_000868_060 Hb_000868_060 Hb_003858_040--Hb_000868_060 Hb_000002_490 Hb_000002_490 Hb_003858_040--Hb_000002_490 Hb_003858_040--Hb_001396_280 Hb_001541_230 Hb_001541_230 Hb_000300_320--Hb_001541_230 Hb_000011_190 Hb_000011_190 Hb_000300_320--Hb_000011_190 Hb_005503_040 Hb_005503_040 Hb_000300_320--Hb_005503_040 Hb_000300_320--Hb_000983_170 Hb_012325_030 Hb_012325_030 Hb_000300_320--Hb_012325_030 Hb_002791_030 Hb_002791_030 Hb_000300_320--Hb_002791_030 Hb_001396_280--Hb_029866_100 Hb_028308_010 Hb_028308_010 Hb_001396_280--Hb_028308_010 Hb_029904_020 Hb_029904_020 Hb_001396_280--Hb_029904_020 Hb_000031_280 Hb_000031_280 Hb_001396_280--Hb_000031_280 Hb_000392_370 Hb_000392_370 Hb_001396_280--Hb_000392_370 Hb_009049_020 Hb_009049_020 Hb_001396_280--Hb_009049_020 Hb_000243_160 Hb_000243_160 Hb_000983_170--Hb_000243_160 Hb_003038_120 Hb_003038_120 Hb_000983_170--Hb_003038_120 Hb_002837_060 Hb_002837_060 Hb_000983_170--Hb_002837_060 Hb_000983_170--Hb_001396_280 Hb_000034_080 Hb_000034_080 Hb_000983_170--Hb_000034_080 Hb_001077_030 Hb_001077_030 Hb_000983_170--Hb_001077_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.1933 15.8316 10.9533 47.064 36.5133 28.7593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3161 9.35393 2.65173 13.1525 7.92551

CAGE analysis