Hb_130563_010

Information

Type -
Description -
Location Contig130563: 3680-9739
Sequence    

Annotation

kegg
ID pop:POPTR_0001s37340g
description POPTRDRAFT_798148; ABC transporter family protein
nr
ID XP_012070981.1
description PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LK64
description ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1
trembl
ID B9GJX7
description ABC transporter family protein OS=Populus trichocarpa GN=POPTR_0001s37340g PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter c family member 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09078: 5134-5419
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130563_010 0.0 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
2 Hb_036069_020 0.0966624397 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
3 Hb_004223_180 0.099053599 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
4 Hb_031931_030 0.1161998794 - - lipid binding protein, putative [Ricinus communis]
5 Hb_001218_070 0.122291935 - - PREDICTED: sugar transport protein 5-like isoform X1 [Jatropha curcas]
6 Hb_000911_050 0.1231577052 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
7 Hb_003398_090 0.1269443862 - - PREDICTED: expansin-A4 [Jatropha curcas]
8 Hb_008692_020 0.1270660382 - - -
9 Hb_000653_010 0.1315554239 - - hypothetical protein CICLE_v10033238mg [Citrus clementina]
10 Hb_008226_020 0.1330122608 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
11 Hb_001377_010 0.1335572637 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
12 Hb_001430_090 0.1369106966 - - hypothetical protein JCGZ_05131 [Jatropha curcas]
13 Hb_000393_030 0.1390497003 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_001136_030 0.1415728117 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
15 Hb_002870_010 0.141876756 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
16 Hb_011671_420 0.1450827519 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
17 Hb_001545_270 0.1465815444 - - laccase, putative [Ricinus communis]
18 Hb_010761_030 0.1492080203 - - cytochrome P450, putative [Ricinus communis]
19 Hb_029769_010 0.1516530722 - - PREDICTED: putative disease resistance protein RGA3 isoform X3 [Populus euphratica]
20 Hb_078081_020 0.1519317722 - - -

Gene co-expression network

sample Hb_130563_010 Hb_130563_010 Hb_036069_020 Hb_036069_020 Hb_130563_010--Hb_036069_020 Hb_004223_180 Hb_004223_180 Hb_130563_010--Hb_004223_180 Hb_031931_030 Hb_031931_030 Hb_130563_010--Hb_031931_030 Hb_001218_070 Hb_001218_070 Hb_130563_010--Hb_001218_070 Hb_000911_050 Hb_000911_050 Hb_130563_010--Hb_000911_050 Hb_003398_090 Hb_003398_090 Hb_130563_010--Hb_003398_090 Hb_036069_020--Hb_000911_050 Hb_001758_120 Hb_001758_120 Hb_036069_020--Hb_001758_120 Hb_001377_010 Hb_001377_010 Hb_036069_020--Hb_001377_010 Hb_000207_340 Hb_000207_340 Hb_036069_020--Hb_000207_340 Hb_000797_030 Hb_000797_030 Hb_036069_020--Hb_000797_030 Hb_004223_180--Hb_036069_020 Hb_003090_180 Hb_003090_180 Hb_004223_180--Hb_003090_180 Hb_002870_010 Hb_002870_010 Hb_004223_180--Hb_002870_010 Hb_004223_180--Hb_001377_010 Hb_004223_180--Hb_000911_050 Hb_010761_030 Hb_010761_030 Hb_031931_030--Hb_010761_030 Hb_002566_010 Hb_002566_010 Hb_031931_030--Hb_002566_010 Hb_029769_010 Hb_029769_010 Hb_031931_030--Hb_029769_010 Hb_008692_020 Hb_008692_020 Hb_031931_030--Hb_008692_020 Hb_000982_120 Hb_000982_120 Hb_031931_030--Hb_000982_120 Hb_109673_010 Hb_109673_010 Hb_001218_070--Hb_109673_010 Hb_046770_010 Hb_046770_010 Hb_001218_070--Hb_046770_010 Hb_000380_130 Hb_000380_130 Hb_001218_070--Hb_000380_130 Hb_001545_270 Hb_001545_270 Hb_001218_070--Hb_001545_270 Hb_011671_420 Hb_011671_420 Hb_001218_070--Hb_011671_420 Hb_033622_020 Hb_033622_020 Hb_001218_070--Hb_033622_020 Hb_000911_050--Hb_000797_030 Hb_003097_200 Hb_003097_200 Hb_000911_050--Hb_003097_200 Hb_000911_050--Hb_001377_010 Hb_000911_050--Hb_001545_270 Hb_006637_040 Hb_006637_040 Hb_000911_050--Hb_006637_040 Hb_001430_090 Hb_001430_090 Hb_003398_090--Hb_001430_090 Hb_003913_060 Hb_003913_060 Hb_003398_090--Hb_003913_060 Hb_015978_010 Hb_015978_010 Hb_003398_090--Hb_015978_010 Hb_000139_500 Hb_000139_500 Hb_003398_090--Hb_000139_500 Hb_000393_030 Hb_000393_030 Hb_003398_090--Hb_000393_030 Hb_000163_010 Hb_000163_010 Hb_003398_090--Hb_000163_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0129026 0.0897926 0.0603134 0.290011 0.00772177 0.00347924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00903011 0 0 0.992925 0.259453

CAGE analysis