Hb_130719_010

Information

Type -
Description -
Location Contig130719: 2943-5070
Sequence    

Annotation

kegg
ID rcu:RCOM_1690700
description vacuolar ATP synthase subunit E, putative
nr
ID AHA83526.1
description V-type proton ATPase subunit E [Hevea brasiliensis]
swissprot
ID Q9SWE7
description V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1
trembl
ID W5RRH1
description V-type proton ATPase subunit E OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0033178
description v-type proton atpase subunit e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09122: 2866-4975
cDNA
(Sanger)
(ID:Location)		 010_D22.ab1: 2862-4533

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130719_010 0.0 - - V-type proton ATPase subunit E [Hevea brasiliensis]
2 Hb_005496_090 0.0717080109 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
3 Hb_000056_250 0.0943234505 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
4 Hb_003291_020 0.1044019421 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
5 Hb_001123_160 0.1085527195 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
6 Hb_000685_050 0.1088733545 - - PREDICTED: mitochondrial inner membrane protein OXA1-like [Populus euphratica]
7 Hb_005054_260 0.1138376615 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
8 Hb_002016_080 0.1162600612 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
9 Hb_008232_010 0.1170743134 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
10 Hb_000820_090 0.1201854881 - - -
11 Hb_017131_010 0.1225235285 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
12 Hb_000417_260 0.1238644195 - - protein with unknown function [Ricinus communis]
13 Hb_148209_010 0.125341279 - - RAS-related GTP-binding family protein [Populus trichocarpa]
14 Hb_138585_040 0.1271064334 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
15 Hb_003880_040 0.12724036 - - hypothetical protein POPTR_0001s30770g [Populus trichocarpa]
16 Hb_004672_010 0.1272816526 - - ecotropic viral integration site, putative [Ricinus communis]
17 Hb_011485_020 0.1273386921 - - protein with unknown function [Ricinus communis]
18 Hb_000574_130 0.1274776618 - - calcineurin-like protein [Hevea brasiliensis]
19 Hb_083380_010 0.1277811485 - - -
20 Hb_000673_020 0.1293967079 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_130719_010 Hb_130719_010 Hb_005496_090 Hb_005496_090 Hb_130719_010--Hb_005496_090 Hb_000056_250 Hb_000056_250 Hb_130719_010--Hb_000056_250 Hb_003291_020 Hb_003291_020 Hb_130719_010--Hb_003291_020 Hb_001123_160 Hb_001123_160 Hb_130719_010--Hb_001123_160 Hb_000685_050 Hb_000685_050 Hb_130719_010--Hb_000685_050 Hb_005054_260 Hb_005054_260 Hb_130719_010--Hb_005054_260 Hb_005496_090--Hb_000056_250 Hb_000016_170 Hb_000016_170 Hb_005496_090--Hb_000016_170 Hb_138585_040 Hb_138585_040 Hb_005496_090--Hb_138585_040 Hb_083380_010 Hb_083380_010 Hb_005496_090--Hb_083380_010 Hb_005496_090--Hb_003291_020 Hb_000096_150 Hb_000096_150 Hb_000056_250--Hb_000096_150 Hb_000056_250--Hb_003291_020 Hb_005278_040 Hb_005278_040 Hb_000056_250--Hb_005278_040 Hb_027751_060 Hb_027751_060 Hb_000056_250--Hb_027751_060 Hb_000417_260 Hb_000417_260 Hb_000056_250--Hb_000417_260 Hb_148209_010 Hb_148209_010 Hb_003291_020--Hb_148209_010 Hb_003291_020--Hb_001123_160 Hb_000384_120 Hb_000384_120 Hb_003291_020--Hb_000384_120 Hb_003126_070 Hb_003126_070 Hb_003291_020--Hb_003126_070 Hb_003880_030 Hb_003880_030 Hb_003291_020--Hb_003880_030 Hb_008232_010 Hb_008232_010 Hb_001123_160--Hb_008232_010 Hb_003622_040 Hb_003622_040 Hb_001123_160--Hb_003622_040 Hb_001123_160--Hb_148209_010 Hb_000563_200 Hb_000563_200 Hb_001123_160--Hb_000563_200 Hb_000300_430 Hb_000300_430 Hb_001123_160--Hb_000300_430 Hb_007054_010 Hb_007054_010 Hb_000685_050--Hb_007054_010 Hb_000574_130 Hb_000574_130 Hb_000685_050--Hb_000574_130 Hb_000072_180 Hb_000072_180 Hb_000685_050--Hb_000072_180 Hb_000685_050--Hb_003291_020 Hb_006420_100 Hb_006420_100 Hb_000685_050--Hb_006420_100 Hb_000739_140 Hb_000739_140 Hb_005054_260--Hb_000739_140 Hb_009075_010 Hb_009075_010 Hb_005054_260--Hb_009075_010 Hb_001979_020 Hb_001979_020 Hb_005054_260--Hb_001979_020 Hb_003020_150 Hb_003020_150 Hb_005054_260--Hb_003020_150 Hb_005054_260--Hb_000384_120 Hb_000163_050 Hb_000163_050 Hb_005054_260--Hb_000163_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8414 22.4535 38.1997 112.524 20.1621 27.4414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.098 169.375 170.71 108.274 68.7988

CAGE analysis