Hb_130775_010

Information

Type -
Description -
Location Contig130775: 2-888
Sequence    

Annotation

kegg
ID rcu:RCOM_0724580
description hypothetical protein
nr
ID XP_002524890.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SFX1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0724580 PE=4 SV=1
Gene Ontology
ID GO:0004372
description protein ifh1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09124: 44-532
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130775_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003636_050 0.2050573937 - - PREDICTED: bark storage protein A-like [Populus euphratica]
3 Hb_013727_010 0.2163085414 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
4 Hb_009268_110 0.2166074805 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
5 Hb_089491_010 0.2168315232 - - -
6 Hb_076583_010 0.2208174567 - - hypothetical protein JCGZ_17827 [Jatropha curcas]
7 Hb_136856_010 0.2248991407 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
8 Hb_005542_020 0.2252876176 - - lupus la ribonucleoprotein, putative [Ricinus communis]
9 Hb_021068_020 0.2306034855 - - -
10 Hb_105480_010 0.2331992743 - - -
11 Hb_064951_010 0.2365734899 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]
12 Hb_009066_010 0.2386446382 - - -
13 Hb_111332_010 0.2386840462 - - Dihydroneopterin aldolase [Morus notabilis]
14 Hb_068347_020 0.2408253798 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
15 Hb_027394_010 0.2408346622 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
16 Hb_124567_010 0.2443792233 - - -
17 Hb_128173_010 0.250789781 - - PREDICTED: uncharacterized protein LOC104219073 [Nicotiana sylvestris]
18 Hb_007761_010 0.2521503131 - - -
19 Hb_000004_140 0.267762302 - - -
20 Hb_086287_020 0.272705828 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_130775_010 Hb_130775_010 Hb_003636_050 Hb_003636_050 Hb_130775_010--Hb_003636_050 Hb_013727_010 Hb_013727_010 Hb_130775_010--Hb_013727_010 Hb_009268_110 Hb_009268_110 Hb_130775_010--Hb_009268_110 Hb_089491_010 Hb_089491_010 Hb_130775_010--Hb_089491_010 Hb_076583_010 Hb_076583_010 Hb_130775_010--Hb_076583_010 Hb_136856_010 Hb_136856_010 Hb_130775_010--Hb_136856_010 Hb_003636_050--Hb_076583_010 Hb_005542_020 Hb_005542_020 Hb_003636_050--Hb_005542_020 Hb_003636_050--Hb_013727_010 Hb_064951_010 Hb_064951_010 Hb_003636_050--Hb_064951_010 Hb_105480_010 Hb_105480_010 Hb_003636_050--Hb_105480_010 Hb_111332_010 Hb_111332_010 Hb_003636_050--Hb_111332_010 Hb_013727_010--Hb_005542_020 Hb_013727_010--Hb_009268_110 Hb_013727_010--Hb_089491_010 Hb_013727_010--Hb_105480_010 Hb_013727_010--Hb_111332_010 Hb_013727_010--Hb_136856_010 Hb_009268_110--Hb_089491_010 Hb_009268_110--Hb_136856_010 Hb_021068_020 Hb_021068_020 Hb_009268_110--Hb_021068_020 Hb_009066_010 Hb_009066_010 Hb_009268_110--Hb_009066_010 Hb_068347_020 Hb_068347_020 Hb_009268_110--Hb_068347_020 Hb_089491_010--Hb_136856_010 Hb_089491_010--Hb_021068_020 Hb_089491_010--Hb_009066_010 Hb_089491_010--Hb_068347_020 Hb_076583_010--Hb_064951_010 Hb_010997_050 Hb_010997_050 Hb_076583_010--Hb_010997_050 Hb_076583_010--Hb_009268_110 Hb_076583_010--Hb_089491_010 Hb_076583_010--Hb_013727_010 Hb_003529_210 Hb_003529_210 Hb_076583_010--Hb_003529_210 Hb_136856_010--Hb_021068_020 Hb_136856_010--Hb_009066_010 Hb_136856_010--Hb_068347_020 Hb_027394_010 Hb_027394_010 Hb_136856_010--Hb_027394_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00946 0.37485 0.691016 0.348233 25.1881 78.3042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.21999 1.53242 0.373923 0 1.62895

CAGE analysis