Hb_130862_010

Information

Type -
Description -
Location Contig130862: 5223-7883
Sequence    

Annotation

kegg
ID rcu:RCOM_0264660
description purine permease, putative
nr
ID XP_002534547.1
description purine permease, putative [Ricinus communis]
swissprot
ID P93039
description Nucleobase-ascorbate transporter 4 OS=Arabidopsis thaliana GN=NAT4 PE=2 SV=2
trembl
ID B9T8H8
description Purine permease, putative OS=Ricinus communis GN=RCOM_0264660 PE=4 SV=1
Gene Ontology
ID GO:0006810
description nucleobase-ascorbate transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130862_010 0.0 - - purine permease, putative [Ricinus communis]
2 Hb_090511_010 0.0022509403 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
3 Hb_012675_030 0.0025580704 - - hypothetical protein POPTR_0013s04780g [Populus trichocarpa]
4 Hb_000769_040 0.0073438392 - - hypothetical protein VITISV_028082 [Vitis vinifera]
5 Hb_105767_030 0.0092593172 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007975_070 0.0106635382 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
7 Hb_022862_010 0.0111372933 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
8 Hb_000193_040 0.0131721175 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
9 Hb_000417_240 0.0156086095 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
10 Hb_154114_040 0.0157462339 - - hypothetical protein B456_001G056600 [Gossypium raimondii]
11 Hb_003995_040 0.015748717 - - PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
12 Hb_000173_070 0.0164290906 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]
13 Hb_000173_040 0.0164528611 - - putative xylanase inhibitor, partial [Triticum aestivum]
14 Hb_000307_080 0.0174207364 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000280_070 0.0193821624 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
16 Hb_000784_050 0.0199067257 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]
17 Hb_002151_140 0.0216367552 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
18 Hb_011179_010 0.0224815714 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
19 Hb_030385_030 0.0259025221 - - PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
20 Hb_003667_030 0.0283784384 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]

Gene co-expression network

sample Hb_130862_010 Hb_130862_010 Hb_090511_010 Hb_090511_010 Hb_130862_010--Hb_090511_010 Hb_012675_030 Hb_012675_030 Hb_130862_010--Hb_012675_030 Hb_000769_040 Hb_000769_040 Hb_130862_010--Hb_000769_040 Hb_105767_030 Hb_105767_030 Hb_130862_010--Hb_105767_030 Hb_007975_070 Hb_007975_070 Hb_130862_010--Hb_007975_070 Hb_022862_010 Hb_022862_010 Hb_130862_010--Hb_022862_010 Hb_090511_010--Hb_012675_030 Hb_090511_010--Hb_000769_040 Hb_090511_010--Hb_022862_010 Hb_000193_040 Hb_000193_040 Hb_090511_010--Hb_000193_040 Hb_090511_010--Hb_105767_030 Hb_012675_030--Hb_000769_040 Hb_012675_030--Hb_022862_010 Hb_012675_030--Hb_000193_040 Hb_012675_030--Hb_105767_030 Hb_000769_040--Hb_022862_010 Hb_000769_040--Hb_000193_040 Hb_154114_040 Hb_154114_040 Hb_000769_040--Hb_154114_040 Hb_105767_030--Hb_007975_070 Hb_000417_240 Hb_000417_240 Hb_105767_030--Hb_000417_240 Hb_003995_040 Hb_003995_040 Hb_105767_030--Hb_003995_040 Hb_000173_070 Hb_000173_070 Hb_105767_030--Hb_000173_070 Hb_000307_080 Hb_000307_080 Hb_105767_030--Hb_000307_080 Hb_007975_070--Hb_000417_240 Hb_007975_070--Hb_003995_040 Hb_007975_070--Hb_000173_070 Hb_007975_070--Hb_000307_080 Hb_000280_070 Hb_000280_070 Hb_007975_070--Hb_000280_070 Hb_022862_010--Hb_000193_040 Hb_022862_010--Hb_154114_040 Hb_000173_040 Hb_000173_040 Hb_022862_010--Hb_000173_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 7.58624 1.8855 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis