Hb_131029_010

Information

Type -
Description -
Location Contig131029: 1-578
Sequence    

Annotation

kegg
ID rcu:RCOM_0024820
description multidrug resistance pump, putative
nr
ID XP_012085478.1
description PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID A0A067JRX8
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_17810 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_131029_010 0.0 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
2 Hb_000670_080 0.1107549837 - - conserved hypothetical protein [Ricinus communis]
3 Hb_161346_010 0.1121274924 - - PREDICTED: germin-like protein subfamily 1 member 20 [Populus euphratica]
4 Hb_182831_020 0.1182590523 - - multidrug resistance pump, putative [Ricinus communis]
5 Hb_082864_010 0.1216278762 - - JHL25H03.10 [Jatropha curcas]
6 Hb_000166_010 0.121630749 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
7 Hb_001544_010 0.1217901256 - - conserved hypothetical protein [Ricinus communis]
8 Hb_042666_010 0.122076065 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
9 Hb_091368_010 0.1224836811 - - gibberellin 20-oxidase, putative [Ricinus communis]
10 Hb_000940_090 0.1230013305 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
11 Hb_000156_020 0.1232888944 - - PREDICTED: la-related protein 6A [Jatropha curcas]
12 Hb_003176_030 0.1232888944 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Solanum lycopersicum]
13 Hb_001587_130 0.1234670597 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
14 Hb_000319_100 0.1235246136 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
15 Hb_001232_030 0.1241601064 - - hypothetical protein POPTR_0001s18270g [Populus trichocarpa]
16 Hb_006326_020 0.1243836178 - - -
17 Hb_000283_170 0.1252485438 - - ATP binding protein, putative [Ricinus communis]
18 Hb_008021_020 0.1253232704 transcription factor TF Family: GRF hypothetical protein POPTR_0014s00780g [Populus trichocarpa]
19 Hb_007289_010 0.1253597845 - - cytochrome P450, putative [Ricinus communis]
20 Hb_015852_010 0.1271312931 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_131029_010 Hb_131029_010 Hb_000670_080 Hb_000670_080 Hb_131029_010--Hb_000670_080 Hb_161346_010 Hb_161346_010 Hb_131029_010--Hb_161346_010 Hb_182831_020 Hb_182831_020 Hb_131029_010--Hb_182831_020 Hb_082864_010 Hb_082864_010 Hb_131029_010--Hb_082864_010 Hb_000166_010 Hb_000166_010 Hb_131029_010--Hb_000166_010 Hb_001544_010 Hb_001544_010 Hb_131029_010--Hb_001544_010 Hb_095532_010 Hb_095532_010 Hb_000670_080--Hb_095532_010 Hb_001522_050 Hb_001522_050 Hb_000670_080--Hb_001522_050 Hb_006326_020 Hb_006326_020 Hb_000670_080--Hb_006326_020 Hb_000032_330 Hb_000032_330 Hb_000670_080--Hb_000032_330 Hb_004875_040 Hb_004875_040 Hb_000670_080--Hb_004875_040 Hb_161346_010--Hb_182831_020 Hb_003171_070 Hb_003171_070 Hb_161346_010--Hb_003171_070 Hb_000676_380 Hb_000676_380 Hb_161346_010--Hb_000676_380 Hb_002413_030 Hb_002413_030 Hb_161346_010--Hb_002413_030 Hb_003789_020 Hb_003789_020 Hb_161346_010--Hb_003789_020 Hb_011139_010 Hb_011139_010 Hb_182831_020--Hb_011139_010 Hb_182831_020--Hb_003789_020 Hb_182831_020--Hb_003171_070 Hb_182831_020--Hb_000676_380 Hb_082864_010--Hb_000166_010 Hb_082864_010--Hb_001544_010 Hb_042666_010 Hb_042666_010 Hb_082864_010--Hb_042666_010 Hb_091368_010 Hb_091368_010 Hb_082864_010--Hb_091368_010 Hb_000940_090 Hb_000940_090 Hb_082864_010--Hb_000940_090 Hb_000156_020 Hb_000156_020 Hb_082864_010--Hb_000156_020 Hb_000166_010--Hb_001544_010 Hb_000166_010--Hb_042666_010 Hb_000166_010--Hb_091368_010 Hb_000166_010--Hb_000940_090 Hb_000166_010--Hb_000156_020 Hb_001544_010--Hb_091368_010 Hb_001544_010--Hb_042666_010 Hb_001232_030 Hb_001232_030 Hb_001544_010--Hb_001232_030 Hb_001544_010--Hb_000940_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.275686 0.0767805 6.57302 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.11647 0

CAGE analysis