Hb_131060_010

Information

Type -
Description -
Location Contig131060: 10-570
Sequence    

Annotation

kegg
ID brp:103848430
description DNA-binding protein HEXBP-like
nr
ID XP_012487759.1
description PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A067LNH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_131060_010 0.0 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
2 Hb_007808_020 0.1848274357 - - -
3 Hb_011016_010 0.2193793249 - - PREDICTED: auxin response factor 2-like [Jatropha curcas]
4 Hb_000350_080 0.2399193619 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
5 Hb_001959_150 0.2712300207 - - -
6 Hb_028486_070 0.292216 - - hypothetical protein CISIN_1g028119mg [Citrus sinensis]
7 Hb_001080_010 0.2949233644 - - -
8 Hb_000084_040 0.298411736 - - hypothetical protein RCOM_1007940 [Ricinus communis]
9 Hb_018464_060 0.3004264588 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_026527_020 0.3016147841 - - PREDICTED: putative methyltransferase DDB_G0268948 [Jatropha curcas]
11 Hb_005072_010 0.323703663 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
12 Hb_007101_230 0.3252413609 - - leucine rich repeat-containing protein, putative [Ricinus communis]
13 Hb_080653_010 0.3257407715 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000068_030 0.3306825208 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
15 Hb_000948_100 0.3310886201 - - -
16 Hb_008516_040 0.3349436302 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000594_090 0.3410878987 - - PREDICTED: allene oxide cyclase 3, chloroplastic-like [Populus euphratica]
18 Hb_000223_180 0.3415455391 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
19 Hb_001268_130 0.3429899603 - - hypothetical protein JCGZ_26837 [Jatropha curcas]
20 Hb_150818_020 0.3517320364 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]

Gene co-expression network

sample Hb_131060_010 Hb_131060_010 Hb_007808_020 Hb_007808_020 Hb_131060_010--Hb_007808_020 Hb_011016_010 Hb_011016_010 Hb_131060_010--Hb_011016_010 Hb_000350_080 Hb_000350_080 Hb_131060_010--Hb_000350_080 Hb_001959_150 Hb_001959_150 Hb_131060_010--Hb_001959_150 Hb_028486_070 Hb_028486_070 Hb_131060_010--Hb_028486_070 Hb_001080_010 Hb_001080_010 Hb_131060_010--Hb_001080_010 Hb_007808_020--Hb_000350_080 Hb_007808_020--Hb_001959_150 Hb_005072_010 Hb_005072_010 Hb_007808_020--Hb_005072_010 Hb_000068_030 Hb_000068_030 Hb_007808_020--Hb_000068_030 Hb_080653_010 Hb_080653_010 Hb_007808_020--Hb_080653_010 Hb_026527_020 Hb_026527_020 Hb_011016_010--Hb_026527_020 Hb_000836_490 Hb_000836_490 Hb_011016_010--Hb_000836_490 Hb_000223_180 Hb_000223_180 Hb_011016_010--Hb_000223_180 Hb_000594_090 Hb_000594_090 Hb_011016_010--Hb_000594_090 Hb_007885_050 Hb_007885_050 Hb_011016_010--Hb_007885_050 Hb_000350_080--Hb_001959_150 Hb_000350_080--Hb_005072_010 Hb_000350_080--Hb_000068_030 Hb_000350_080--Hb_080653_010 Hb_000350_080--Hb_001080_010 Hb_001959_150--Hb_005072_010 Hb_001959_150--Hb_000068_030 Hb_001959_150--Hb_080653_010 Hb_000249_120 Hb_000249_120 Hb_001959_150--Hb_000249_120 Hb_000948_100 Hb_000948_100 Hb_028486_070--Hb_000948_100 Hb_004157_110 Hb_004157_110 Hb_028486_070--Hb_004157_110 Hb_020580_010 Hb_020580_010 Hb_028486_070--Hb_020580_010 Hb_013429_020 Hb_013429_020 Hb_028486_070--Hb_013429_020 Hb_007101_230 Hb_007101_230 Hb_028486_070--Hb_007101_230 Hb_001080_010--Hb_001959_150 Hb_001080_010--Hb_007808_020 Hb_001080_010--Hb_005072_010 Hb_001080_010--Hb_000068_030 Hb_001080_010--Hb_000594_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.175677 0.152015 0.25325 0

CAGE analysis