Hb_131181_010

Information

Type -
Description -
Location Contig131181: 1610-4922
Sequence    

Annotation

kegg
ID rcu:RCOM_0482790
description transcription initiation factor iia (tfiia), gamma chain, putative
nr
ID XP_002527359.1
description transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
swissprot
ID Q39236
description Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana GN=TFIIA-S PE=2 SV=2
trembl
ID B9SMZ0
description Transcription initiation factor IIA subunit 2 OS=Ricinus communis GN=RCOM_0482790 PE=3 SV=1
Gene Ontology
ID GO:0005672
description transcription initiation factor iia subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09156: 2720-3112 , PASA_asmbl_09158: 4660-4874
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_131181_010 0.0 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
2 Hb_026053_020 0.0590627886 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
3 Hb_018133_020 0.065730417 - - transporter, putative [Ricinus communis]
4 Hb_000160_180 0.0709288071 - - methionyl-tRNA formyltransferase, putative [Ricinus communis]
5 Hb_001279_080 0.078736144 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
6 Hb_001318_260 0.080497169 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
7 Hb_001329_150 0.0900715674 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
8 Hb_008071_020 0.0905698966 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
9 Hb_004057_010 0.0910753421 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
10 Hb_024074_010 0.0920072194 - - PREDICTED: cytochrome c [Jatropha curcas]
11 Hb_000457_180 0.092725185 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
12 Hb_006831_130 0.0943872469 - - catalytic, putative [Ricinus communis]
13 Hb_011512_070 0.0953203503 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
14 Hb_000431_070 0.0956803417 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
15 Hb_000676_390 0.0961823108 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
16 Hb_150651_040 0.0964826908 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
17 Hb_002540_080 0.0967553012 - - cysteine-type peptidase, putative [Ricinus communis]
18 Hb_000840_180 0.0969461034 - - protein BOLA2 [Jatropha curcas]
19 Hb_000189_240 0.0970320434 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
20 Hb_000302_140 0.0978001237 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_131181_010 Hb_131181_010 Hb_026053_020 Hb_026053_020 Hb_131181_010--Hb_026053_020 Hb_018133_020 Hb_018133_020 Hb_131181_010--Hb_018133_020 Hb_000160_180 Hb_000160_180 Hb_131181_010--Hb_000160_180 Hb_001279_080 Hb_001279_080 Hb_131181_010--Hb_001279_080 Hb_001318_260 Hb_001318_260 Hb_131181_010--Hb_001318_260 Hb_001329_150 Hb_001329_150 Hb_131181_010--Hb_001329_150 Hb_000189_240 Hb_000189_240 Hb_026053_020--Hb_000189_240 Hb_008071_020 Hb_008071_020 Hb_026053_020--Hb_008071_020 Hb_000996_140 Hb_000996_140 Hb_026053_020--Hb_000996_140 Hb_026053_020--Hb_018133_020 Hb_001141_140 Hb_001141_140 Hb_026053_020--Hb_001141_140 Hb_018133_020--Hb_001279_080 Hb_018133_020--Hb_001318_260 Hb_012114_070 Hb_012114_070 Hb_018133_020--Hb_012114_070 Hb_000840_180 Hb_000840_180 Hb_018133_020--Hb_000840_180 Hb_002540_080 Hb_002540_080 Hb_000160_180--Hb_002540_080 Hb_000160_180--Hb_001318_260 Hb_000160_180--Hb_018133_020 Hb_000160_180--Hb_001279_080 Hb_000160_180--Hb_026053_020 Hb_001279_080--Hb_008071_020 Hb_001931_010 Hb_001931_010 Hb_001279_080--Hb_001931_010 Hb_000431_070 Hb_000431_070 Hb_001279_080--Hb_000431_070 Hb_000045_310 Hb_000045_310 Hb_001279_080--Hb_000045_310 Hb_000566_120 Hb_000566_120 Hb_001279_080--Hb_000566_120 Hb_001318_260--Hb_001279_080 Hb_001318_260--Hb_002540_080 Hb_002872_050 Hb_002872_050 Hb_001318_260--Hb_002872_050 Hb_001053_140 Hb_001053_140 Hb_001329_150--Hb_001053_140 Hb_000419_070 Hb_000419_070 Hb_001329_150--Hb_000419_070 Hb_000571_020 Hb_000571_020 Hb_001329_150--Hb_000571_020 Hb_002000_140 Hb_002000_140 Hb_001329_150--Hb_002000_140 Hb_002303_060 Hb_002303_060 Hb_001329_150--Hb_002303_060 Hb_001329_150--Hb_000189_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.3588 24.579 79.862 53.743 24.5132 32.4427
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
105.155 146.359 54.6898 35.6465 51.9279

CAGE analysis