Hb_131320_010

Information

Type -
Description -
Location Contig131320: 1-780
Sequence    

Annotation

kegg
ID vvi:100255980
description probable LRR receptor-like serine/threonine-protein kinase At4g08850
nr
ID XP_012067862.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A067KYY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15779 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_131320_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
2 Hb_000675_040 0.1284147738 - - hypothetical protein OsI_02937 [Oryza sativa Indica Group]
3 Hb_072173_010 0.1535430587 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
4 Hb_000600_080 0.1570894029 - - -
5 Hb_145211_010 0.1614907148 - - hypothetical protein M569_05648, partial [Genlisea aurea]
6 Hb_008144_010 0.1617601272 - - hypothetical protein VITISV_015004 [Vitis vinifera]
7 Hb_129046_010 0.1646592678 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
8 Hb_000644_040 0.1720699612 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_009157 [Vitis vinifera]
9 Hb_002122_050 0.1731244832 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_008834_010 0.1815633838 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
11 Hb_002997_050 0.181844312 - - PREDICTED: receptor-like protein 12 isoform X4 [Populus euphratica]
12 Hb_000169_100 0.1828218292 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
13 Hb_059780_010 0.1835519728 - - PREDICTED: uncharacterized protein LOC104885482, partial [Beta vulgaris subsp. vulgaris]
14 Hb_000959_370 0.184100162 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
15 Hb_000685_140 0.1884524546 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
16 Hb_170878_060 0.1884939976 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
17 Hb_009230_020 0.1901319386 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
18 Hb_001355_060 0.1904241844 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
19 Hb_121441_010 0.2009356351 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
20 Hb_001411_100 0.2012637682 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_131320_010 Hb_131320_010 Hb_000675_040 Hb_000675_040 Hb_131320_010--Hb_000675_040 Hb_072173_010 Hb_072173_010 Hb_131320_010--Hb_072173_010 Hb_000600_080 Hb_000600_080 Hb_131320_010--Hb_000600_080 Hb_145211_010 Hb_145211_010 Hb_131320_010--Hb_145211_010 Hb_008144_010 Hb_008144_010 Hb_131320_010--Hb_008144_010 Hb_129046_010 Hb_129046_010 Hb_131320_010--Hb_129046_010 Hb_000675_040--Hb_145211_010 Hb_059780_010 Hb_059780_010 Hb_000675_040--Hb_059780_010 Hb_121441_010 Hb_121441_010 Hb_000675_040--Hb_121441_010 Hb_002122_050 Hb_002122_050 Hb_000675_040--Hb_002122_050 Hb_007676_060 Hb_007676_060 Hb_000675_040--Hb_007676_060 Hb_072173_010--Hb_000600_080 Hb_000101_320 Hb_000101_320 Hb_072173_010--Hb_000101_320 Hb_000685_140 Hb_000685_140 Hb_072173_010--Hb_000685_140 Hb_008834_010 Hb_008834_010 Hb_072173_010--Hb_008834_010 Hb_002733_050 Hb_002733_050 Hb_072173_010--Hb_002733_050 Hb_114121_010 Hb_114121_010 Hb_072173_010--Hb_114121_010 Hb_000600_080--Hb_000685_140 Hb_001411_100 Hb_001411_100 Hb_000600_080--Hb_001411_100 Hb_000600_080--Hb_000101_320 Hb_031949_010 Hb_031949_010 Hb_000600_080--Hb_031949_010 Hb_000959_370 Hb_000959_370 Hb_000600_080--Hb_000959_370 Hb_145211_010--Hb_059780_010 Hb_002566_010 Hb_002566_010 Hb_145211_010--Hb_002566_010 Hb_000946_030 Hb_000946_030 Hb_145211_010--Hb_000946_030 Hb_145211_010--Hb_121441_010 Hb_145211_010--Hb_002122_050 Hb_001571_020 Hb_001571_020 Hb_008144_010--Hb_001571_020 Hb_009230_020 Hb_009230_020 Hb_008144_010--Hb_009230_020 Hb_008144_010--Hb_072173_010 Hb_110782_010 Hb_110782_010 Hb_008144_010--Hb_110782_010 Hb_009848_060 Hb_009848_060 Hb_008144_010--Hb_009848_060 Hb_003183_010 Hb_003183_010 Hb_129046_010--Hb_003183_010 Hb_000975_260 Hb_000975_260 Hb_129046_010--Hb_000975_260 Hb_000169_100 Hb_000169_100 Hb_129046_010--Hb_000169_100 Hb_129046_010--Hb_000675_040 Hb_002631_270 Hb_002631_270 Hb_129046_010--Hb_002631_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.101749 0 0.0542403 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.244579 0.329661

CAGE analysis