Hb_131652_010

Information

Type -
Description -
Location Contig131652: 703-977
Sequence    

Annotation

kegg
ID cic:CICLE_v10010066mg
description hypothetical protein
nr
ID XP_006451634.1
description hypothetical protein CICLE_v10010066mg [Citrus clementina]
swissprot
ID Q0WQN4
description Ras-related protein RABA6b OS=Arabidopsis thaliana GN=RABA6B PE=2 SV=2
trembl
ID V4WEB3
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010066mg PE=4 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein raba6a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_131652_010 0.0 - - hypothetical protein CICLE_v10010066mg [Citrus clementina]
2 Hb_002942_180 0.2031137511 - - phosphate transporter [Manihot esculenta]
3 Hb_011206_020 0.2343817623 - - -
4 Hb_008226_110 0.2364757611 - - uncharacterized protein LOC100501343 [Zea mays]
5 Hb_000098_300 0.2512250177 - - -
6 Hb_005392_100 0.2512467678 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
7 Hb_006971_080 0.2652099779 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_000740_120 0.2660674487 - - -
9 Hb_002267_120 0.2778162306 - - hypothetical protein B456_009G136300 [Gossypium raimondii]
10 Hb_052402_010 0.290731552 - - -
11 Hb_004770_060 0.2951219982 - - unnamed protein product, partial [Coffea canephora]
12 Hb_000679_200 0.2951554311 - - EIN3-binding F box protein 1 [Theobroma cacao]
13 Hb_004724_120 0.3015915847 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
14 Hb_033044_010 0.3069579139 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5-like isoform X3 [Gossypium raimondii]
15 Hb_000565_010 0.3080424032 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
16 Hb_020532_010 0.3101038391 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
17 Hb_022891_010 0.3110844794 - - chitinase-like protein [Hevea brasiliensis]
18 Hb_000415_070 0.3136452413 - - -
19 Hb_141296_010 0.3156373531 - - -
20 Hb_021068_030 0.3200307788 transcription factor TF Family: M-type hypothetical protein B456_010G032700 [Gossypium raimondii]

Gene co-expression network

sample Hb_131652_010 Hb_131652_010 Hb_002942_180 Hb_002942_180 Hb_131652_010--Hb_002942_180 Hb_011206_020 Hb_011206_020 Hb_131652_010--Hb_011206_020 Hb_008226_110 Hb_008226_110 Hb_131652_010--Hb_008226_110 Hb_000098_300 Hb_000098_300 Hb_131652_010--Hb_000098_300 Hb_005392_100 Hb_005392_100 Hb_131652_010--Hb_005392_100 Hb_006971_080 Hb_006971_080 Hb_131652_010--Hb_006971_080 Hb_002942_180--Hb_008226_110 Hb_020532_010 Hb_020532_010 Hb_002942_180--Hb_020532_010 Hb_002942_180--Hb_006971_080 Hb_002942_180--Hb_005392_100 Hb_002267_120 Hb_002267_120 Hb_002942_180--Hb_002267_120 Hb_011206_020--Hb_000098_300 Hb_068014_010 Hb_068014_010 Hb_011206_020--Hb_068014_010 Hb_052402_010 Hb_052402_010 Hb_011206_020--Hb_052402_010 Hb_007083_020 Hb_007083_020 Hb_011206_020--Hb_007083_020 Hb_000740_120 Hb_000740_120 Hb_011206_020--Hb_000740_120 Hb_008226_110--Hb_006971_080 Hb_008226_110--Hb_005392_100 Hb_008226_110--Hb_002267_120 Hb_147355_030 Hb_147355_030 Hb_008226_110--Hb_147355_030 Hb_141296_010 Hb_141296_010 Hb_000098_300--Hb_141296_010 Hb_000679_200 Hb_000679_200 Hb_000098_300--Hb_000679_200 Hb_022891_010 Hb_022891_010 Hb_000098_300--Hb_022891_010 Hb_007333_040 Hb_007333_040 Hb_000098_300--Hb_007333_040 Hb_060391_010 Hb_060391_010 Hb_000098_300--Hb_060391_010 Hb_033385_010 Hb_033385_010 Hb_000098_300--Hb_033385_010 Hb_005392_100--Hb_006971_080 Hb_005392_100--Hb_002267_120 Hb_005392_100--Hb_147355_030 Hb_006971_080--Hb_002267_120 Hb_006971_080--Hb_147355_030 Hb_082960_020 Hb_082960_020 Hb_006971_080--Hb_082960_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.16433 1.75879 0 19.5731 1.15081 33.9388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.780582 0.62213 1.50941 34.2466 0

CAGE analysis