Hb_131864_030

Information

Type transcription factor
Description TF Family: C2H2
Location Contig131864: 26966-28729
Sequence    

Annotation

kegg
ID rcu:RCOM_0906580
description transcription factor, putative
nr
ID XP_002518577.1
description transcription factor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RXV8
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0906580 PE=4 SV=1
Gene Ontology
ID GO:0003950
description zinc finger and btb domain-containing 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09243: 27274-28633
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_131864_030 0.0 transcription factor TF Family: C2H2 transcription factor, putative [Ricinus communis]
2 Hb_011609_040 0.2008497947 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
3 Hb_027472_130 0.2205978061 - - Cytochrome P450 [Theobroma cacao]
4 Hb_005883_070 0.2325171499 - - PREDICTED: probable myosin-binding protein 5 [Jatropha curcas]
5 Hb_002942_090 0.2371801778 - - DNAJ heat shock N-terminal domain-containing protein, putative [Theobroma cacao]
6 Hb_000058_050 0.2415242102 - - PREDICTED: uncharacterized protein LOC105640877 [Jatropha curcas]
7 Hb_005675_060 0.242906293 - - PREDICTED: protein NIM1-INTERACTING 2 [Jatropha curcas]
8 Hb_002897_070 0.2455080014 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
9 Hb_008959_040 0.2482859434 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
10 Hb_000185_230 0.2482886994 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_000076_100 0.2548470618 - - PREDICTED: septum-promoting GTP-binding protein 1 [Jatropha curcas]
12 Hb_005548_030 0.2575018496 - - hypothetical protein JCGZ_05606 [Jatropha curcas]
13 Hb_004945_020 0.2587402538 - - PREDICTED: probable calcium-binding protein CML30 [Vitis vinifera]
14 Hb_007592_020 0.2648058022 - - acyltransferase, putative [Ricinus communis]
15 Hb_003494_010 0.2652928486 - - hypothetical protein JCGZ_19838 [Jatropha curcas]
16 Hb_001369_470 0.2673836392 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
17 Hb_001059_090 0.2686457178 - - PREDICTED: F-box protein At1g61340 [Jatropha curcas]
18 Hb_008221_130 0.2697533355 - - hypothetical protein VITISV_016971 [Vitis vinifera]
19 Hb_000820_160 0.2701829875 - - -
20 Hb_000189_430 0.2707547667 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_131864_030 Hb_131864_030 Hb_011609_040 Hb_011609_040 Hb_131864_030--Hb_011609_040 Hb_027472_130 Hb_027472_130 Hb_131864_030--Hb_027472_130 Hb_005883_070 Hb_005883_070 Hb_131864_030--Hb_005883_070 Hb_002942_090 Hb_002942_090 Hb_131864_030--Hb_002942_090 Hb_000058_050 Hb_000058_050 Hb_131864_030--Hb_000058_050 Hb_005675_060 Hb_005675_060 Hb_131864_030--Hb_005675_060 Hb_126648_010 Hb_126648_010 Hb_011609_040--Hb_126648_010 Hb_002321_040 Hb_002321_040 Hb_011609_040--Hb_002321_040 Hb_013834_010 Hb_013834_010 Hb_011609_040--Hb_013834_010 Hb_000959_190 Hb_000959_190 Hb_011609_040--Hb_000959_190 Hb_002600_130 Hb_002600_130 Hb_011609_040--Hb_002600_130 Hb_000640_050 Hb_000640_050 Hb_011609_040--Hb_000640_050 Hb_001269_510 Hb_001269_510 Hb_027472_130--Hb_001269_510 Hb_002960_110 Hb_002960_110 Hb_027472_130--Hb_002960_110 Hb_027472_130--Hb_000058_050 Hb_000613_040 Hb_000613_040 Hb_027472_130--Hb_000613_040 Hb_000189_390 Hb_000189_390 Hb_027472_130--Hb_000189_390 Hb_000185_230 Hb_000185_230 Hb_005883_070--Hb_000185_230 Hb_001059_090 Hb_001059_090 Hb_005883_070--Hb_001059_090 Hb_000109_130 Hb_000109_130 Hb_005883_070--Hb_000109_130 Hb_006775_070 Hb_006775_070 Hb_005883_070--Hb_006775_070 Hb_006545_020 Hb_006545_020 Hb_005883_070--Hb_006545_020 Hb_047442_010 Hb_047442_010 Hb_005883_070--Hb_047442_010 Hb_000997_150 Hb_000997_150 Hb_002942_090--Hb_000997_150 Hb_002942_090--Hb_000058_050 Hb_003026_030 Hb_003026_030 Hb_002942_090--Hb_003026_030 Hb_002400_230 Hb_002400_230 Hb_002942_090--Hb_002400_230 Hb_001269_310 Hb_001269_310 Hb_002942_090--Hb_001269_310 Hb_004223_110 Hb_004223_110 Hb_002942_090--Hb_004223_110 Hb_002609_190 Hb_002609_190 Hb_000058_050--Hb_002609_190 Hb_010368_080 Hb_010368_080 Hb_000058_050--Hb_010368_080 Hb_012305_140 Hb_012305_140 Hb_000058_050--Hb_012305_140 Hb_000076_100 Hb_000076_100 Hb_000058_050--Hb_000076_100 Hb_005568_090 Hb_005568_090 Hb_000058_050--Hb_005568_090 Hb_001196_080 Hb_001196_080 Hb_000058_050--Hb_001196_080 Hb_000803_310 Hb_000803_310 Hb_005675_060--Hb_000803_310 Hb_004945_020 Hb_004945_020 Hb_005675_060--Hb_004945_020 Hb_001907_130 Hb_001907_130 Hb_005675_060--Hb_001907_130 Hb_005675_060--Hb_027472_130 Hb_000401_010 Hb_000401_010 Hb_005675_060--Hb_000401_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0702228 0.453452 1.10618 0.367496 0.671681 0.0658505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0377476 0.0593883 0.110808 0.142588 0

CAGE analysis