Hb_131872_010

Information

Type -
Description -
Location Contig131872: 10186-14837
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_131872_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_001341_020 0.185788661 - - Uncharacterised protein [Bordetella pertussis]
3 Hb_131102_010 0.2024094154 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_002226_050 0.2150241343 - - PREDICTED: uncharacterized protein LOC105641366 isoform X1 [Jatropha curcas]
5 Hb_007054_050 0.2182088098 - - -
6 Hb_062671_010 0.2238299142 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
7 Hb_003944_020 0.2357420338 - - PREDICTED: uncharacterized protein LOC105110580 [Populus euphratica]
8 Hb_006717_080 0.2461165173 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
9 Hb_000014_190 0.2469763349 - - Phytoene dehydrogenase, putative [Ricinus communis]
10 Hb_000300_310 0.2505106707 - - PREDICTED: uncharacterized protein LOC104896902 [Beta vulgaris subsp. vulgaris]
11 Hb_078477_060 0.2532190451 - - PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
12 Hb_000012_160 0.2563099011 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
13 Hb_006452_240 0.2583336801 - - PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Jatropha curcas]
14 Hb_005396_060 0.2587802274 - - -
15 Hb_012707_020 0.2626480461 - - -
16 Hb_063405_020 0.2626509436 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
17 Hb_148593_010 0.2627821467 - - PREDICTED: serine/threonine-protein kinase ATR-like [Jatropha curcas]
18 Hb_154726_010 0.2686642108 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
19 Hb_030131_030 0.2704939516 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
20 Hb_012305_090 0.2741751569 - - hypothetical protein VITISV_018166 [Vitis vinifera]

Gene co-expression network

sample Hb_131872_010 Hb_131872_010 Hb_001341_020 Hb_001341_020 Hb_131872_010--Hb_001341_020 Hb_131102_010 Hb_131102_010 Hb_131872_010--Hb_131102_010 Hb_002226_050 Hb_002226_050 Hb_131872_010--Hb_002226_050 Hb_007054_050 Hb_007054_050 Hb_131872_010--Hb_007054_050 Hb_062671_010 Hb_062671_010 Hb_131872_010--Hb_062671_010 Hb_003944_020 Hb_003944_020 Hb_131872_010--Hb_003944_020 Hb_005396_060 Hb_005396_060 Hb_001341_020--Hb_005396_060 Hb_001341_020--Hb_002226_050 Hb_006452_240 Hb_006452_240 Hb_001341_020--Hb_006452_240 Hb_000022_140 Hb_000022_140 Hb_001341_020--Hb_000022_140 Hb_148593_010 Hb_148593_010 Hb_001341_020--Hb_148593_010 Hb_133820_010 Hb_133820_010 Hb_131102_010--Hb_133820_010 Hb_019656_010 Hb_019656_010 Hb_131102_010--Hb_019656_010 Hb_043708_010 Hb_043708_010 Hb_131102_010--Hb_043708_010 Hb_001450_010 Hb_001450_010 Hb_131102_010--Hb_001450_010 Hb_004650_060 Hb_004650_060 Hb_131102_010--Hb_004650_060 Hb_002639_110 Hb_002639_110 Hb_002226_050--Hb_002639_110 Hb_030131_030 Hb_030131_030 Hb_002226_050--Hb_030131_030 Hb_003089_020 Hb_003089_020 Hb_002226_050--Hb_003089_020 Hb_001223_010 Hb_001223_010 Hb_002226_050--Hb_001223_010 Hb_032258_010 Hb_032258_010 Hb_002226_050--Hb_032258_010 Hb_000460_070 Hb_000460_070 Hb_007054_050--Hb_000460_070 Hb_002360_030 Hb_002360_030 Hb_007054_050--Hb_002360_030 Hb_008698_010 Hb_008698_010 Hb_007054_050--Hb_008698_010 Hb_000683_080 Hb_000683_080 Hb_007054_050--Hb_000683_080 Hb_000122_210 Hb_000122_210 Hb_007054_050--Hb_000122_210 Hb_004218_260 Hb_004218_260 Hb_007054_050--Hb_004218_260 Hb_060658_010 Hb_060658_010 Hb_062671_010--Hb_060658_010 Hb_062671_010--Hb_006452_240 Hb_027760_090 Hb_027760_090 Hb_062671_010--Hb_027760_090 Hb_000300_310 Hb_000300_310 Hb_062671_010--Hb_000300_310 Hb_012760_110 Hb_012760_110 Hb_062671_010--Hb_012760_110 Hb_003944_020--Hb_001341_020 Hb_003944_020--Hb_005396_060 Hb_003944_020--Hb_000022_140 Hb_003944_020--Hb_004650_060 Hb_092650_010 Hb_092650_010 Hb_003944_020--Hb_092650_010 Hb_066487_010 Hb_066487_010 Hb_003944_020--Hb_066487_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00919589 0.0234337 0.00339838 0 0.0046008 0.020235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0208292 0.016392 0.0157483 0.055177 0.158151

CAGE analysis