Hb_131967_010

Information

Type -
Description -
Location Contig131967: 1865-2811
Sequence    

Annotation

kegg
ID rcu:RCOM_0476750
description eukaryotic translation initiation factor 2c, putative
nr
ID XP_002523757.1
description eukaryotic translation initiation factor 2c, putative [Ricinus communis]
swissprot
ID Q851R2
description Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1
trembl
ID B9SCN8
description Protein argonaute OS=Ricinus communis GN=RCOM_0476750 PE=3 SV=1
Gene Ontology
ID GO:0003743
description protein argonaute mel1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_131967_010 0.0 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
2 Hb_002148_020 0.130794616 - - aldo-keto reductase, putative [Ricinus communis]
3 Hb_000001_190 0.1679671323 - - hypothetical protein CISIN_1g0082522mg, partial [Citrus sinensis]
4 Hb_005754_010 0.1699065988 - - hypothetical protein POPTR_0660s00210g [Populus trichocarpa]
5 Hb_003464_080 0.1707778137 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
6 Hb_000530_010 0.1709122937 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Jatropha curcas]
7 Hb_001769_080 0.17301821 - - hypothetical protein SORBIDRAFT_10g023200 [Sorghum bicolor]
8 Hb_001369_440 0.1730442584 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
9 Hb_074715_010 0.1746523824 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
10 Hb_002170_040 0.1753489736 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001195_160 0.1765104062 - - -
12 Hb_000676_080 0.1770191344 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
13 Hb_000347_440 0.1776339091 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
14 Hb_000359_140 0.177744507 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
15 Hb_034552_030 0.1780118472 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
16 Hb_003940_040 0.1781312625 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001025_110 0.1785251617 - - conserved hypothetical protein [Ricinus communis]
18 Hb_027760_070 0.1787066747 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
19 Hb_000200_120 0.1790808014 - - PREDICTED: probable fructose-bisphosphate aldolase 3, chloroplastic [Jatropha curcas]
20 Hb_002232_320 0.1793671269 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_131967_010 Hb_131967_010 Hb_002148_020 Hb_002148_020 Hb_131967_010--Hb_002148_020 Hb_000001_190 Hb_000001_190 Hb_131967_010--Hb_000001_190 Hb_005754_010 Hb_005754_010 Hb_131967_010--Hb_005754_010 Hb_003464_080 Hb_003464_080 Hb_131967_010--Hb_003464_080 Hb_000530_010 Hb_000530_010 Hb_131967_010--Hb_000530_010 Hb_001769_080 Hb_001769_080 Hb_131967_010--Hb_001769_080 Hb_006698_040 Hb_006698_040 Hb_002148_020--Hb_006698_040 Hb_000025_630 Hb_000025_630 Hb_002148_020--Hb_000025_630 Hb_122548_010 Hb_122548_010 Hb_002148_020--Hb_122548_010 Hb_088163_010 Hb_088163_010 Hb_002148_020--Hb_088163_010 Hb_085972_010 Hb_085972_010 Hb_002148_020--Hb_085972_010 Hb_000200_120 Hb_000200_120 Hb_000001_190--Hb_000200_120 Hb_002217_030 Hb_002217_030 Hb_000001_190--Hb_002217_030 Hb_000692_160 Hb_000692_160 Hb_000001_190--Hb_000692_160 Hb_000001_190--Hb_003464_080 Hb_000302_310 Hb_000302_310 Hb_000001_190--Hb_000302_310 Hb_099878_030 Hb_099878_030 Hb_000001_190--Hb_099878_030 Hb_002309_010 Hb_002309_010 Hb_005754_010--Hb_002309_010 Hb_032278_020 Hb_032278_020 Hb_005754_010--Hb_032278_020 Hb_164544_010 Hb_164544_010 Hb_005754_010--Hb_164544_010 Hb_000120_430 Hb_000120_430 Hb_005754_010--Hb_000120_430 Hb_001454_380 Hb_001454_380 Hb_005754_010--Hb_001454_380 Hb_103760_010 Hb_103760_010 Hb_005754_010--Hb_103760_010 Hb_003464_080--Hb_002217_030 Hb_000089_120 Hb_000089_120 Hb_003464_080--Hb_000089_120 Hb_003464_080--Hb_000200_120 Hb_143629_110 Hb_143629_110 Hb_003464_080--Hb_143629_110 Hb_116349_070 Hb_116349_070 Hb_003464_080--Hb_116349_070 Hb_001635_090 Hb_001635_090 Hb_003464_080--Hb_001635_090 Hb_005048_130 Hb_005048_130 Hb_000530_010--Hb_005048_130 Hb_000062_070 Hb_000062_070 Hb_000530_010--Hb_000062_070 Hb_000191_150 Hb_000191_150 Hb_000530_010--Hb_000191_150 Hb_000116_410 Hb_000116_410 Hb_000530_010--Hb_000116_410 Hb_074715_010 Hb_074715_010 Hb_000530_010--Hb_074715_010 Hb_112798_020 Hb_112798_020 Hb_000530_010--Hb_112798_020 Hb_001025_110 Hb_001025_110 Hb_001769_080--Hb_001025_110 Hb_002447_040 Hb_002447_040 Hb_001769_080--Hb_002447_040 Hb_158062_010 Hb_158062_010 Hb_001769_080--Hb_158062_010 Hb_001454_400 Hb_001454_400 Hb_001769_080--Hb_001454_400 Hb_140291_010 Hb_140291_010 Hb_001769_080--Hb_140291_010 Hb_000270_630 Hb_000270_630 Hb_001769_080--Hb_000270_630
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.63116 4.7263 2.1178 11.4603 5.61734 10.3975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.41756 8.30875 1.80457 11.4722 1.18024

CAGE analysis