Hb_132148_010

Information

Type -
Description -
Location Contig132148: 14-836
Sequence    

Annotation

kegg
ID cic:CICLE_v10006890mg
description hypothetical protein
nr
ID XP_006421106.1
description hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID V4SBL0
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10006890mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein CICLE_v10006890mg, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132148_010 0.0 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
2 Hb_002582_090 0.0096932743 - - PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum]
3 Hb_048826_010 0.012357773 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB28-like [Jatropha curcas]
4 Hb_000672_070 0.0234450771 - - PREDICTED: uncharacterized protein LOC105631678 [Jatropha curcas]
5 Hb_003766_030 0.0255322685 - - PREDICTED: nuclear transport factor 2-like [Gossypium raimondii]
6 Hb_001373_120 0.0299291943 - - Uncharacterized protein TCM_031358 [Theobroma cacao]
7 Hb_101733_020 0.0326658896 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Jatropha curcas]
8 Hb_081445_010 0.0332721328 - - hypothetical protein JCGZ_04541 [Jatropha curcas]
9 Hb_008637_010 0.034210256 - - Major latex protein, putative [Ricinus communis]
10 Hb_000264_200 0.0406807063 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
11 Hb_000120_140 0.0409511627 - - hypothetical protein POPTR_0009s05160g [Populus trichocarpa]
12 Hb_011671_300 0.0419002991 - - 14.3 kDa oleosin [Jatropha curcas]
13 Hb_067197_020 0.0533954267 - - -
14 Hb_004712_100 0.0556918455 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
15 Hb_001198_070 0.0608655088 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010896_010 0.0645059088 - - -
17 Hb_000522_100 0.0652650027 - - PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Nelumbo nucifera]
18 Hb_002232_330 0.0654733165 - - -
19 Hb_025248_030 0.0671357981 - - hypothetical protein JCGZ_09377 [Jatropha curcas]
20 Hb_001268_360 0.0715733192 - - PREDICTED: uncharacterized protein LOC104447679 [Eucalyptus grandis]

Gene co-expression network

sample Hb_132148_010 Hb_132148_010 Hb_002582_090 Hb_002582_090 Hb_132148_010--Hb_002582_090 Hb_048826_010 Hb_048826_010 Hb_132148_010--Hb_048826_010 Hb_000672_070 Hb_000672_070 Hb_132148_010--Hb_000672_070 Hb_003766_030 Hb_003766_030 Hb_132148_010--Hb_003766_030 Hb_001373_120 Hb_001373_120 Hb_132148_010--Hb_001373_120 Hb_101733_020 Hb_101733_020 Hb_132148_010--Hb_101733_020 Hb_002582_090--Hb_048826_010 Hb_002582_090--Hb_000672_070 Hb_002582_090--Hb_101733_020 Hb_081445_010 Hb_081445_010 Hb_002582_090--Hb_081445_010 Hb_002582_090--Hb_003766_030 Hb_048826_010--Hb_000672_070 Hb_048826_010--Hb_101733_020 Hb_048826_010--Hb_081445_010 Hb_048826_010--Hb_003766_030 Hb_000672_070--Hb_101733_020 Hb_000672_070--Hb_081445_010 Hb_067197_020 Hb_067197_020 Hb_000672_070--Hb_067197_020 Hb_003766_030--Hb_001373_120 Hb_008637_010 Hb_008637_010 Hb_003766_030--Hb_008637_010 Hb_000264_200 Hb_000264_200 Hb_003766_030--Hb_000264_200 Hb_000120_140 Hb_000120_140 Hb_003766_030--Hb_000120_140 Hb_011671_300 Hb_011671_300 Hb_003766_030--Hb_011671_300 Hb_001373_120--Hb_008637_010 Hb_001373_120--Hb_000264_200 Hb_001373_120--Hb_000120_140 Hb_001373_120--Hb_011671_300 Hb_004712_100 Hb_004712_100 Hb_001373_120--Hb_004712_100 Hb_101733_020--Hb_081445_010 Hb_101733_020--Hb_067197_020 Hb_010896_010 Hb_010896_010 Hb_101733_020--Hb_010896_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0816626 0.0259247 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis